| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:59 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the NanoStringQCPro package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NanoStringQCPro.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1267/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| NanoStringQCPro 1.26.0 (landing page) Robert Ziman
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: NanoStringQCPro |
| Version: 1.26.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:NanoStringQCPro.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings NanoStringQCPro_1.26.0.tar.gz |
| StartedAt: 2022-04-12 23:37:11 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 23:41:55 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 284.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: NanoStringQCPro.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:NanoStringQCPro.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings NanoStringQCPro_1.26.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/NanoStringQCPro.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'NanoStringQCPro/DESCRIPTION' ... OK
* this is package 'NanoStringQCPro' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'NanoStringQCPro' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'knitr'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
centeredSampleClustering: no visible global function definition for
'png'
centeredSampleClustering: no visible global function definition for
'dev.off'
countsInBlankSamples_verticalPlot: no visible global function
definition for 'png'
countsInBlankSamples_verticalPlot: no visible global function
definition for 'dev.off'
geneClustering: no visible global function definition for 'png'
geneClustering: no visible global function definition for 'dev.off'
negCtrlsByLane_verticalPlot: no visible global function definition for
'png'
negCtrlsByLane_verticalPlot: no visible global function definition for
'dev.off'
previewPNG: no visible global function definition for 'png'
previewPNG: no visible global function definition for 'dev.off'
sampleClustering,RccSet: no visible global function definition for
'png'
sampleClustering,RccSet: no visible global function definition for
'dev.off'
Undefined global functions or variables:
dev.off png
Consider adding
importFrom("grDevices", "dev.off", "png")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
makeQCReport 7.92 2.19 10.11
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
makeQCReport 8.22 2.08 10.32
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/NanoStringQCPro.Rcheck/00check.log'
for details.
NanoStringQCPro.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/NanoStringQCPro_1.26.0.tar.gz && rm -rf NanoStringQCPro.buildbin-libdir && mkdir NanoStringQCPro.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NanoStringQCPro.buildbin-libdir NanoStringQCPro_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL NanoStringQCPro_1.26.0.zip && rm NanoStringQCPro_1.26.0.tar.gz NanoStringQCPro_1.26.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 245k 100 245k 0 0 912k 0 --:--:-- --:--:-- --:--:-- 914k
install for i386
* installing *source* package 'NanoStringQCPro' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'NanoStringQCPro'
finding HTML links ... done
NanoStringQCPro html
RccSet-class html
finding level-2 HTML links ... done
RccSet html
addCodesetAnnotation html
addQCFlags html
allSumPlot html
assessHousekeeping html
bdPlot html
buildCodesetAnnotation html
checkRccSet html
colByCovar html
colByFun html
contentNorm html
copyRccSet html
countsInBlankSamples_verticalPlot html
ctrlsOverviewPlot html
ctrlsZprimePlot html
cutoffByMMAD html
cutoffByVar html
dCoVar html
densityPlot html
example_rccSet html
flagSamplesCount html
flagSamplesCtrl html
flagSamplesTech html
fovPlot html
geneClustering html
getBackground html
getBlankLabel html
getSpikeInInput html
iqrPlot html
lodAssess html
lodPlot html
makeQCReport html
myCols html
nSolverBackground html
nSolverCsv.to.pdata_fdata_adata html
negCtrlsByLane html
negCtrlsByLane_verticalPlot html
negCtrlsPairs html
negCtrlsPlot html
newRccSet html
panelCor html
pcaPlot html
pdata_fdata_adata.to.rccSet html
posCtrlNorm html
posNormFactPlot html
posR2Plot html
posRatioPlot html
posSlopePlot html
posSumVsAllSumPlot html
preprocRccSet html
presAbsCall html
previewPNG html
rccFiles.to.pdata_fdata_adata html
readCdrDesignData html
readRcc html
readRccBatch html
readRccCollectorToolExport html
readRlf html
sampleClustering html
scatterPair html
subtractBackground html
zfacFun html
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'NanoStringQCPro' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NanoStringQCPro' as NanoStringQCPro_1.26.0.zip
* DONE (NanoStringQCPro)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'NanoStringQCPro' successfully unpacked and MD5 sums checked
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NanoStringQCPro.Rcheck/examples_i386/NanoStringQCPro-Ex.timings
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NanoStringQCPro.Rcheck/examples_x64/NanoStringQCPro-Ex.timings
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