| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:53 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the MicrobiotaProcess package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MicrobiotaProcess.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1146/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MicrobiotaProcess 1.6.6 (landing page) Shuangbin Xu
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MicrobiotaProcess |
| Version: 1.6.6 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MicrobiotaProcess_1.6.6.tar.gz && rm -rf MicrobiotaProcess.buildbin-libdir && mkdir MicrobiotaProcess.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MicrobiotaProcess.buildbin-libdir MicrobiotaProcess_1.6.6.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MicrobiotaProcess_1.6.6.zip && rm MicrobiotaProcess_1.6.6.tar.gz MicrobiotaProcess_1.6.6.zip |
| StartedAt: 2022-04-12 06:24:53 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:29:16 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 263.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MicrobiotaProcess_1.6.6.tar.gz && rm -rf MicrobiotaProcess.buildbin-libdir && mkdir MicrobiotaProcess.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MicrobiotaProcess.buildbin-libdir MicrobiotaProcess_1.6.6.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MicrobiotaProcess_1.6.6.zip && rm MicrobiotaProcess_1.6.6.tar.gz MicrobiotaProcess_1.6.6.zip
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install for i386
* installing *source* package 'MicrobiotaProcess' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'taxonomy<-' with signature 'x="MPSE",value="taxonomyTable"': no definition for class "taxonomyTable"
Creating a generic function for 'rownames<-' from package 'base' in package 'MicrobiotaProcess'
in method for 'get_alltaxadf' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'get_taxadf' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'get_alphaindex' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'get_NRI_NTI' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'get_rarecurve' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'get_upset' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'get_vennlist' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'drop_taxa' with signature '"phyloseq"': no definition for class "phyloseq"
** help
*** installing help indices
converting help for package 'MicrobiotaProcess'
finding HTML links ... done
ImportDada2 html
ImportQiime2 html
MPSE-accessors html
MPSE-class html
MPSE html
alphasample-class html
as.MPSE html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MicrobiotaProcess.buildbin-libdir/00LOCK-MicrobiotaProcess/00new/MicrobiotaProcess/help/as.mpse.html
as.phyloseq html
as.treedata html
build_tree html
convert_to_treedata html
data-hmp_aerobiosis_small html
data-kostic2012crc html
data-test_otu_data html
diffAnalysisClass-class html
diff_analysis html
dr_extract html
drop_taxa html
extract_binary_offspring html
generalizedFC html
get_NRI_NTI-methods html
get_alltaxadf html
get_alphaindex html
get_clust html
get_coord html
get_count html
get_dist html
get_mean_median html
get_pca html
get_pcoa html
get_pvalue html
get_rarecurve html
get_sampledflist html
get_taxadf html
get_upset html
get_varct html
get_vennlist html
ggbartax html
ggbox html
ggclust html
ggdiffbox html
ggdiffclade html
ggdifftaxbar html
ggeffectsize html
ggordpoint html
ggrarecurve html
finding level-2 HTML links ... done
mouse.time.mpse html
mp_adonis-methods html
mp_aggregate-methods html
mp_aggregate_clade-methods html
mp_anosim-methods html
mp_balance_clade-methods html
mp_cal_abundance-methods html
mp_cal_alpha-methods html
mp_cal_cca-methods html
mp_cal_clust-methods html
mp_cal_dca-methods html
mp_cal_dist-methods html
mp_cal_nmds-methods html
mp_cal_pca-methods html
mp_cal_pcoa-methods html
mp_cal_pd_metric-methods html
mp_cal_rarecurve-methods html
mp_cal_rda-methods html
mp_cal_upset-methods html
mp_cal_venn-methods html
mp_decostand-methods html
mp_diff_analysis-methods html
mp_diff_clade-methods html
mp_envfit-methods html
mp_extract_abundance-methods html
mp_extract_assays-methods html
mp_extract_dist-methods html
mp_extract_feature-methods html
mp_extract_internal_attr-methods html
mp_extract_rarecurve-methods html
mp_extract_refseq-methods html
mp_extract_sample-methods html
mp_extract_taxonomy-methods html
mp_extract_tree-methods html
mp_filter_taxa-methods html
mp_fortify html
mp_import_metaphlan html
mp_import_qiime html
mp_mantel-methods html
mp_mrpp-methods html
mp_plot_abundance-methods html
mp_plot_alpha-methods html
mp_plot_diff_res-methods html
mp_plot_dist-methods html
mp_plot_ord-methods html
mp_plot_rarecurve-methods html
mp_plot_upset-methods html
mp_plot_venn-methods html
mp_rrarefy-methods html
mp_select_as_tip-methods html
mp_stat_taxa-methods html
multi_compare html
ordplotClass-class html
pcasample-class html
pcoa-class html
prcomp-class html
print html
read_qza html
reexports html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MicrobiotaProcess.buildbin-libdir/00LOCK-MicrobiotaProcess/00new/MicrobiotaProcess/help/as.treedata.html
set_scale_theme html
show-methods html
split_data html
split_str_to_list html
theme_taxbar html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MicrobiotaProcess' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MicrobiotaProcess' as MicrobiotaProcess_1.6.6.zip
* DONE (MicrobiotaProcess)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MicrobiotaProcess' successfully unpacked and MD5 sums checked