| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:55 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the MOGAMUN package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MOGAMUN.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1191/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MOGAMUN 1.4.0 (landing page) Elva-María Novoa-del-Toro
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MOGAMUN |
| Version: 1.4.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MOGAMUN.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MOGAMUN_1.4.0.tar.gz |
| StartedAt: 2022-04-12 23:08:20 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 23:09:46 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 86.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MOGAMUN.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MOGAMUN.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MOGAMUN_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/MOGAMUN.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'MOGAMUN/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MOGAMUN' version '1.4.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MOGAMUN' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'unitTests.R' OK ** running tests for arch 'x64' ... Running 'unitTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
MOGAMUN.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MOGAMUN_1.4.0.tar.gz && rm -rf MOGAMUN.buildbin-libdir && mkdir MOGAMUN.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MOGAMUN.buildbin-libdir MOGAMUN_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MOGAMUN_1.4.0.zip && rm MOGAMUN_1.4.0.tar.gz MOGAMUN_1.4.0.zip
###
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install for i386
* installing *source* package 'MOGAMUN' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MOGAMUN'
finding HTML links ... done
mogamun_init html
mogamun_load_data html
mogamun_postprocess html
mogamun_run html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MOGAMUN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MOGAMUN' as MOGAMUN_1.4.0.zip
* DONE (MOGAMUN)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MOGAMUN' successfully unpacked and MD5 sums checked
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MOGAMUN.Rcheck/tests_i386/unitTests.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Our package. Used for the test suite name
> pkgname <- c("MOGAMUN", "RUnit")
>
> for (p in pkgname) {
+ require(p, quietly=TRUE, character.only=TRUE) ||
+ stop("package '", p, "' not found")
+ }
>
> pkgname <- "MOGAMUN"
>
> # Determine which files to load (have to start with test_ and end with .R)
> pattern <- "^test.*\\.R$"
>
> # Which functions to run. Have to start with 'test.'
> testFunctionRegexp = "^test.+"
>
> # Path to the unit tests folder in the package
> directory <- paste0(system.file("tests", package=pkgname), "/")
> if (.Platform$OS.type == "windows") { # windows needs the absolute file names
+ directory <- list.files(directory, pattern = pattern, full.names = TRUE)
+ }
>
> for (dir in directory) {
+ # Define RUnit test suite
+ suite <- defineTestSuite(name=paste(pkgname, "RUnit Tests"),
+ dirs=dir,
+ testFileRegexp=pattern,
+ testFuncRegexp = testFunctionRegexp,
+ rngKind="default",
+ rngNormalKind="default")
+
+ # Run tests
+ result <- runTestSuite(suite)
+
+ # Display result tests on the console
+ printTextProtocol(result)
+
+ # Write results in JUnit-like xml format
+ printJUnitProtocol(result, fileName="junit.xml")
+ }
RUNIT TEST PROTOCOL -- Tue Apr 12 23:09:35 2022
***********************************************
Number of test functions: 0
Number of errors: 0
Number of failures: 0
1 Test Suite :
MOGAMUN RUnit Tests - 0 test functions, 0 errors, 0 failures
Details
***************************
Test Suite: MOGAMUN RUnit Tests
Test function regexp: ^test.+
Test file regexp: ^test.*\.R$
Involved directory:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/MOGAMUN/tests/test.mogamun.R
no test files
>
>
> proc.time()
user system elapsed
1.98 0.12 2.09
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MOGAMUN.Rcheck/tests_x64/unitTests.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Our package. Used for the test suite name
> pkgname <- c("MOGAMUN", "RUnit")
>
> for (p in pkgname) {
+ require(p, quietly=TRUE, character.only=TRUE) ||
+ stop("package '", p, "' not found")
+ }
>
> pkgname <- "MOGAMUN"
>
> # Determine which files to load (have to start with test_ and end with .R)
> pattern <- "^test.*\\.R$"
>
> # Which functions to run. Have to start with 'test.'
> testFunctionRegexp = "^test.+"
>
> # Path to the unit tests folder in the package
> directory <- paste0(system.file("tests", package=pkgname), "/")
> if (.Platform$OS.type == "windows") { # windows needs the absolute file names
+ directory <- list.files(directory, pattern = pattern, full.names = TRUE)
+ }
>
> for (dir in directory) {
+ # Define RUnit test suite
+ suite <- defineTestSuite(name=paste(pkgname, "RUnit Tests"),
+ dirs=dir,
+ testFileRegexp=pattern,
+ testFuncRegexp = testFunctionRegexp,
+ rngKind="default",
+ rngNormalKind="default")
+
+ # Run tests
+ result <- runTestSuite(suite)
+
+ # Display result tests on the console
+ printTextProtocol(result)
+
+ # Write results in JUnit-like xml format
+ printJUnitProtocol(result, fileName="junit.xml")
+ }
RUNIT TEST PROTOCOL -- Tue Apr 12 23:09:37 2022
***********************************************
Number of test functions: 0
Number of errors: 0
Number of failures: 0
1 Test Suite :
MOGAMUN RUnit Tests - 0 test functions, 0 errors, 0 failures
Details
***************************
Test Suite: MOGAMUN RUnit Tests
Test function regexp: ^test.+
Test file regexp: ^test.*\.R$
Involved directory:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/MOGAMUN/tests/test.mogamun.R
no test files
>
>
> proc.time()
user system elapsed
2.03 0.14 2.17
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MOGAMUN.Rcheck/examples_i386/MOGAMUN-Ex.timings
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MOGAMUN.Rcheck/examples_x64/MOGAMUN-Ex.timings
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