| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:45 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the ISAnalytics package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ISAnalytics.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 956/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ISAnalytics 1.4.3 (landing page) Andrea Calabria
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ISAnalytics |
| Version: 1.4.3 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ISAnalytics_1.4.3.tar.gz && rm -rf ISAnalytics.buildbin-libdir && mkdir ISAnalytics.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ISAnalytics.buildbin-libdir ISAnalytics_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ISAnalytics_1.4.3.zip && rm ISAnalytics_1.4.3.tar.gz ISAnalytics_1.4.3.zip |
| StartedAt: 2022-04-12 06:50:47 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:53:28 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 161.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ISAnalytics_1.4.3.tar.gz && rm -rf ISAnalytics.buildbin-libdir && mkdir ISAnalytics.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ISAnalytics.buildbin-libdir ISAnalytics_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ISAnalytics_1.4.3.zip && rm ISAnalytics_1.4.3.tar.gz ISAnalytics_1.4.3.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
2 2452k 2 51087 0 0 323k 0 0:00:07 --:--:-- 0:00:07 323k
97 2452k 97 2396k 0 0 2083k 0 0:00:01 0:00:01 --:--:-- 2083k
100 2452k 100 2452k 0 0 2128k 0 0:00:01 0:00:01 --:--:-- 2128k
install for i386
* installing *source* package 'ISAnalytics' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ISAnalytics'
finding HTML links ... done
CIS_grubbs html
CIS_volcano_plot html
HSC_population_plot html
HSC_population_size_estimate html
ISAnalytics-deprecated html
ISAnalytics html
aggregate_metadata html
aggregate_values_by_key html
annotation_IS_vars html
annotation_issues html
as_sparse_matrix html
association_file html
association_file_columns html
available_outlier_tests html
blood_lineages_default html
circos_genomic_density html
clinical_relevant_suspicious_genes html
comparison_matrix html
compute_abundance html
compute_near_integrations html
cumulative_count_union html
cumulative_is html
date_columns_coll html
date_formats html
default_iss_file_prefixes html
default_meta_agg html
default_report_path html
default_stats html
generate_Vispa2_launch_AF html
generate_blank_association_file html
import_Vispa2_stats html
import_association_file html
import_parallel_Vispa2Matrices html
import_parallel_Vispa2Matrices_auto html
import_parallel_Vispa2Matrices_interactive
html
import_single_Vispa2Matrix html
integration_alluvial_plot html
integration_matrices html
is_sharing html
iss_source html
known_clinical_oncogenes html
mandatory_IS_vars html
matching_options html
outlier_filter html
outliers_by_pool_fragments html
proto_oncogenes html
purity_filter html
quantification_types html
realign_after_collisions html
reduced_AF_columns html
refGene_table_cols html
refGenes_hg19 html
remove_collisions html
sample_statistics html
separate_quant_matrices html
sharing_heatmap html
sharing_venn html
threshold_filter html
top_abund_tableGrob html
top_integrations html
unzip_file_system html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ISAnalytics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ISAnalytics' as ISAnalytics_1.4.3.zip
* DONE (ISAnalytics)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ISAnalytics' successfully unpacked and MD5 sums checked