Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:42 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for Herper on tokay2


To the developers/maintainers of the Herper package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Herper.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 862/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Herper 1.4.0  (landing page)
Thomas Carroll
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/Herper
git_branch: RELEASE_3_14
git_last_commit: f9c3ca8
git_last_commit_date: 2021-10-26 13:04:02 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    TIMEOUT  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    TIMEOUT  skippedskipped

Summary

Package: Herper
Version: 1.4.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Herper.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Herper_1.4.0.tar.gz
StartedAt: 2022-04-12 21:05:02 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 21:59:02 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 3239.7 seconds
RetCode: 0
Status:   OK  
CheckDir: Herper.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Herper.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Herper_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/Herper.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Herper/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Herper' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Herper' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
ListCondaEnvironments 0.40   0.62  455.08
install_CondaSysReqs  0.19   0.33   24.21
UseEnvironments       0.11   0.35  209.93
ListCondaPackages     0.03   0.16    7.22
SaveEnvironments      0.00   0.07   11.31
install_CondaTools    0.02   0.00    6.80
search_conda          0.01   0.00    7.14
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
ListCondaEnvironments 0.26   0.73  696.00
UseEnvironments       0.02   0.49  700.46
install_CondaSysReqs  0.07   0.34   29.81
ListCondaPackages     0.00   0.16   12.12
SaveEnvironments      0.01   0.01   15.72
install_CondaTools    0.00   0.00   13.14
search_conda          0.00   0.00   12.72
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Herper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Herper_1.4.0.tar.gz && rm -rf Herper.buildbin-libdir && mkdir Herper.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Herper.buildbin-libdir Herper_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Herper_1.4.0.zip && rm Herper_1.4.0.tar.gz Herper_1.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 27  590k   27  161k    0     0   477k      0  0:00:01 --:--:--  0:00:01  477k
100  590k  100  590k    0     0   751k      0 --:--:-- --:--:-- --:--:--  751k

install for i386

* installing *source* package 'Herper' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Herper'
    finding HTML links ... done
    ListCondaEnvironments                   html  
    ListCondaPackages                       html  
    SaveEnvironments                        html  
    UseEnvironments                         html  
    conda_create_silentJSON                 html  
    conda_install_silentJSON                html  
    install_CondaSysReqs                    html  
    install_CondaTools                      html  
    search_conda                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Herper' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Herper' as Herper_1.4.0.zip
* DONE (Herper)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'Herper' successfully unpacked and MD5 sums checked

Tests output

Herper.Rcheck/tests_i386/testthat.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Herper)
Loading required package: reticulate
> 
> test_check("Herper")
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Windows-x86.exe'
Content type 'application/octet-stream' length 69767264 bytes (66.5 MB)
==================================================
downloaded 66.5 MB

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: C:\Users\BIOCBU~1\BBS-3~1.14-\tmpdir\RTMPEU~2\Test

  added / updated specs:
    - conda


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    ca-certificates-2022.3.29  |       h9f7ea03_0         123 KB
    cffi-1.15.0                |   py39hc431981_1         217 KB
    colorama-0.4.4             |     pyhd3eb1b0_0          21 KB
    conda-4.12.0               |   py39h9f7ea03_0        14.5 MB
    conda-package-handling-1.8.1|   py39h559d222_0         684 KB
    cryptography-36.0.0        |   py39h1ff2cf0_0        1012 KB
    openssl-1.1.1n             |       hc431981_0         4.4 MB
    pyopenssl-22.0.0           |     pyhd3eb1b0_0          50 KB
    setuptools-61.2.0          |   py39h9f7ea03_0         1.0 MB
    sqlite-3.38.2              |       hc431981_0         790 KB
    tqdm-4.63.0                |     pyhd3eb1b0_0          84 KB
    tzdata-2022a               |       hda174b7_0         109 KB
    urllib3-1.26.8             |     pyhd3eb1b0_0         106 KB
    ------------------------------------------------------------
                                           Total:        23.0 MB

The following NEW packages will be INSTALLED:

  colorama           pkgs/main/noarch::colorama-0.4.4-pyhd3eb1b0_0

The following packages will be REMOVED:

  conda-content-trust-0.1.1-pyhd3eb1b0_0
  six-1.16.0-pyhd3eb1b0_0

The following packages will be UPDATED:

  ca-certificates                     2021.10.26-h9f7ea03_2 --> 2022.3.29-h9f7ea03_0
  cffi                                1.15.0-py39hc431981_0 --> 1.15.0-py39hc431981_1
  conda                               4.11.0-py39h9f7ea03_0 --> 4.12.0-py39h9f7ea03_0
  conda-package-han~                   1.7.3-py39h559d222_1 --> 1.8.1-py39h559d222_0
  cryptography                         3.4.7-py39h2dc1c97_0 --> 36.0.0-py39h1ff2cf0_0
  openssl                                 1.1.1m-hc431981_0 --> 1.1.1n-hc431981_0
  pyopenssl                             21.0.0-pyhd3eb1b0_1 --> 22.0.0-pyhd3eb1b0_0
  setuptools                          58.0.4-py39h9f7ea03_0 --> 61.2.0-py39h9f7ea03_0
  sqlite                                  3.37.0-hc431981_0 --> 3.38.2-hc431981_0
  tqdm                                  4.62.3-pyhd3eb1b0_1 --> 4.63.0-pyhd3eb1b0_0
  tzdata                                   2021e-hda174b7_0 --> 2022a-hda174b7_0
  urllib3                               1.26.7-pyhd3eb1b0_0 --> 1.26.8-pyhd3eb1b0_0



Downloading and Extracting Packages

sqlite-3.38.2        | 790 KB    |            |   0% 
sqlite-3.38.2        | 790 KB    | 2          |   2% 
sqlite-3.38.2        | 790 KB    | ##4        |  24% 
sqlite-3.38.2        | 790 KB    | ########## | 100% 
sqlite-3.38.2        | 790 KB    | ########## | 100% 

conda-4.12.0         | 14.5 MB   |            |   0% 
conda-4.12.0         | 14.5 MB   | 4          |   5% 
conda-4.12.0         | 14.5 MB   | ##5        |  25% 
conda-4.12.0         | 14.5 MB   | ####8      |  49% 
conda-4.12.0         | 14.5 MB   | ######5    |  65% 
conda-4.12.0         | 14.5 MB   | #######9   |  80% 
conda-4.12.0         | 14.5 MB   | ########## | 100% 
conda-4.12.0         | 14.5 MB   | ########## | 100% 

cryptography-36.0.0  | 1012 KB   |            |   0% 
cryptography-36.0.0  | 1012 KB   | #####      |  51% 
cryptography-36.0.0  | 1012 KB   | ########## | 100% 
cryptography-36.0.0  | 1012 KB   | ########## | 100% 

colorama-0.4.4       | 21 KB     |            |   0% 
colorama-0.4.4       | 21 KB     | ########## | 100% 
colorama-0.4.4       | 21 KB     | ########## | 100% 

setuptools-61.2.0    | 1.0 MB    |            |   0% 
setuptools-61.2.0    | 1.0 MB    | ####4      |  44% 
setuptools-61.2.0    | 1.0 MB    | ########## | 100% 
setuptools-61.2.0    | 1.0 MB    | ########## | 100% 

tzdata-2022a         | 109 KB    |            |   0% 
tzdata-2022a         | 109 KB    | ########## | 100% 
tzdata-2022a         | 109 KB    | ########## | 100% 

tqdm-4.63.0          | 84 KB     |            |   0% 
tqdm-4.63.0          | 84 KB     | ########## | 100% 
tqdm-4.63.0          | 84 KB     | ########## | 100% 

cffi-1.15.0          | 217 KB    |            |   0% 
cffi-1.15.0          | 217 KB    | ########## | 100% 
cffi-1.15.0          | 217 KB    | ########## | 100% 

urllib3-1.26.8       | 106 KB    |            |   0% 
urllib3-1.26.8       | 106 KB    | ########## | 100% 
urllib3-1.26.8       | 106 KB    | ########## | 100% 

ca-certificates-2022 | 123 KB    |            |   0% 
ca-certificates-2022 | 123 KB    | ########## | 100% 
ca-certificates-2022 | 123 KB    | ########## | 100% 

conda-package-handli | 684 KB    |            |   0% 
conda-package-handli | 684 KB    | ########## | 100% 
conda-package-handli | 684 KB    | ########## | 100% 

openssl-1.1.1n       | 4.4 MB    |            |   0% 
openssl-1.1.1n       | 4.4 MB    | ##         |  20% 
openssl-1.1.1n       | 4.4 MB    | ########## | 100% 
openssl-1.1.1n       | 4.4 MB    | ########## | 100% 

pyopenssl-22.0.0     | 50 KB     |            |   0% 
pyopenssl-22.0.0     | 50 KB     | ########## | 100% 
pyopenssl-22.0.0     | 50 KB     | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: C:\Users\BIOCBU~1\BBS-3~1.14-\tmpdir\RTMPEU~2\Test\envs\r-reticulate

  added / updated specs:
    - numpy
    - python=3.8


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    blas-1.0                   |              mkl           6 KB
    ca-certificates-2018.4.16  |                0         176 KB  conda-forge
    certifi-2021.10.8          |   py38h9f7ea03_2         153 KB
    intel-openmp-2021.4.0      |    h9f7ea03_3556         1.3 MB
    mkl-2021.4.0               |     h9f7ea03_640        59.3 MB
    mkl-service-2.4.0          |   py38hc431981_0          45 KB
    mkl_fft-1.3.1              |   py38h116a794_0         129 KB
    mkl_random-1.2.2           |   py38hcf78d83_0         206 KB
    numpy-1.21.5               |   py38hf27c404_1          25 KB
    numpy-base-1.21.5          |   py38hb79ded8_1         4.2 MB
    pip-22.0.4                 |     pyhd8ed1ab_0         1.5 MB  conda-forge
    python-3.8.13              |       h53c7b84_0        15.9 MB
    setuptools-61.2.0          |   py38h9f7ea03_0         1.0 MB
    six-1.16.0                 |     pyh6c4a22f_0          14 KB  conda-forge
    wheel-0.37.1               |     pyhd8ed1ab_0          31 KB  conda-forge
    wincertstore-0.2           |   py38h9f7ea03_2          15 KB
    ------------------------------------------------------------
                                           Total:        83.9 MB

The following NEW packages will be INSTALLED:

  blas               pkgs/main/win-32::blas-1.0-mkl
  ca-certificates    conda-forge/win-32::ca-certificates-2018.4.16-0
  certifi            pkgs/main/win-32::certifi-2021.10.8-py38h9f7ea03_2
  intel-openmp       pkgs/main/win-32::intel-openmp-2021.4.0-h9f7ea03_3556
  mkl                pkgs/main/win-32::mkl-2021.4.0-h9f7ea03_640
  mkl-service        pkgs/main/win-32::mkl-service-2.4.0-py38hc431981_0
  mkl_fft            pkgs/main/win-32::mkl_fft-1.3.1-py38h116a794_0
  mkl_random         pkgs/main/win-32::mkl_random-1.2.2-py38hcf78d83_0
  numpy              pkgs/main/win-32::numpy-1.21.5-py38hf27c404_1
  numpy-base         pkgs/main/win-32::numpy-base-1.21.5-py38hb79ded8_1
  openssl            pkgs/main/win-32::openssl-1.1.1n-hc431981_0
  pip                conda-forge/noarch::pip-22.0.4-pyhd8ed1ab_0
  python             pkgs/main/win-32::python-3.8.13-h53c7b84_0
  setuptools         pkgs/main/win-32::setuptools-61.2.0-py38h9f7ea03_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
  sqlite             pkgs/main/win-32::sqlite-3.38.2-hc431981_0
  vc                 pkgs/main/win-32::vc-14.2-h21ff451_1
  vs2015_runtime     pkgs/main/win-32::vs2015_runtime-14.27.29016-h5e58377_2
  wheel              conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  wincertstore       pkgs/main/win-32::wincertstore-0.2-py38h9f7ea03_2


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 3 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 3 ]
> 
> proc.time()
   user  system elapsed 
   3.04    1.75  422.54 

Herper.Rcheck/tests_x64/testthat.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Herper)
Loading required package: reticulate
> 
> test_check("Herper")
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Windows-x86_64.exe'
Content type 'application/octet-stream' length 73787936 bytes (70.4 MB)
==================================================
downloaded 70.4 MB

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: C:\Users\BIOCBU~1\BBS-3~1.14-\tmpdir\RTMPGD~1\Test

  added / updated specs:
    - conda


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    ca-certificates-2022.3.29  |       haa95532_0         122 KB
    cffi-1.15.0                |   py39h2bbff1b_1         224 KB
    colorama-0.4.4             |     pyhd3eb1b0_0          21 KB
    conda-4.12.0               |   py39haa95532_0        14.5 MB
    conda-package-handling-1.8.1|   py39h8cc25b3_0         729 KB
    openssl-1.1.1n             |       h2bbff1b_0         4.8 MB
    pyopenssl-22.0.0           |     pyhd3eb1b0_0          50 KB
    setuptools-61.2.0          |   py39haa95532_0         1.0 MB
    sqlite-3.38.2              |       h2bbff1b_0         807 KB
    tqdm-4.63.0                |     pyhd3eb1b0_0          84 KB
    tzdata-2022a               |       hda174b7_0         109 KB
    urllib3-1.26.8             |     pyhd3eb1b0_0         106 KB
    ------------------------------------------------------------
                                           Total:        22.5 MB

The following NEW packages will be INSTALLED:

  colorama           pkgs/main/noarch::colorama-0.4.4-pyhd3eb1b0_0

The following packages will be REMOVED:

  conda-content-trust-0.1.1-pyhd3eb1b0_0
  six-1.16.0-pyhd3eb1b0_0

The following packages will be UPDATED:

  ca-certificates                     2021.10.26-haa95532_2 --> 2022.3.29-haa95532_0
  cffi                                1.15.0-py39h2bbff1b_0 --> 1.15.0-py39h2bbff1b_1
  conda                               4.11.0-py39haa95532_0 --> 4.12.0-py39haa95532_0
  conda-package-han~                   1.7.3-py39h8cc25b3_1 --> 1.8.1-py39h8cc25b3_0
  openssl                                 1.1.1m-h2bbff1b_0 --> 1.1.1n-h2bbff1b_0
  pyopenssl                             21.0.0-pyhd3eb1b0_1 --> 22.0.0-pyhd3eb1b0_0
  setuptools                          58.0.4-py39haa95532_0 --> 61.2.0-py39haa95532_0
  sqlite                                  3.37.0-h2bbff1b_0 --> 3.38.2-h2bbff1b_0
  tqdm                                  4.62.3-pyhd3eb1b0_1 --> 4.63.0-pyhd3eb1b0_0
  tzdata                                   2021e-hda174b7_0 --> 2022a-hda174b7_0
  urllib3                               1.26.7-pyhd3eb1b0_0 --> 1.26.8-pyhd3eb1b0_0



Downloading and Extracting Packages

tqdm-4.63.0          | 84 KB     |            |   0% 
tqdm-4.63.0          | 84 KB     | #9         |  19% 
tqdm-4.63.0          | 84 KB     | ########## | 100% 
tqdm-4.63.0          | 84 KB     | ########## | 100% 

setuptools-61.2.0    | 1.0 MB    |            |   0% 
setuptools-61.2.0    | 1.0 MB    | #2         |  12% 
setuptools-61.2.0    | 1.0 MB    | ########## | 100% 
setuptools-61.2.0    | 1.0 MB    | ########## | 100% 

tzdata-2022a         | 109 KB    |            |   0% 
tzdata-2022a         | 109 KB    | ########## | 100% 
tzdata-2022a         | 109 KB    | ########## | 100% 

sqlite-3.38.2        | 807 KB    |            |   0% 
sqlite-3.38.2        | 807 KB    | ########## | 100% 
sqlite-3.38.2        | 807 KB    | ########## | 100% 

cffi-1.15.0          | 224 KB    |            |   0% 
cffi-1.15.0          | 224 KB    | ########## | 100% 
cffi-1.15.0          | 224 KB    | ########## | 100% 

conda-4.12.0         | 14.5 MB   |            |   0% 
conda-4.12.0         | 14.5 MB   | 2          |   2% 
conda-4.12.0         | 14.5 MB   | ##8        |  29% 
conda-4.12.0         | 14.5 MB   | ####6      |  47% 
conda-4.12.0         | 14.5 MB   | ######2    |  62% 
conda-4.12.0         | 14.5 MB   | #######3   |  73% 
conda-4.12.0         | 14.5 MB   | ########1  |  82% 
conda-4.12.0         | 14.5 MB   | #########1 |  91% 
conda-4.12.0         | 14.5 MB   | ########## | 100% 
conda-4.12.0         | 14.5 MB   | ########## | 100% 

colorama-0.4.4       | 21 KB     |            |   0% 
colorama-0.4.4       | 21 KB     | ########## | 100% 
colorama-0.4.4       | 21 KB     | ########## | 100% 

openssl-1.1.1n       | 4.8 MB    |            |   0% 
openssl-1.1.1n       | 4.8 MB    | 9          |  10% 
openssl-1.1.1n       | 4.8 MB    | #####4     |  55% 
openssl-1.1.1n       | 4.8 MB    | ########## | 100% 
openssl-1.1.1n       | 4.8 MB    | ########## | 100% 

conda-package-handli | 729 KB    |            |   0% 
conda-package-handli | 729 KB    | #####7     |  57% 
conda-package-handli | 729 KB    | ########## | 100% 

ca-certificates-2022 | 122 KB    |            |   0% 
ca-certificates-2022 | 122 KB    | ########## | 100% 
ca-certificates-2022 | 122 KB    | ########## | 100% 

urllib3-1.26.8       | 106 KB    |            |   0% 
urllib3-1.26.8       | 106 KB    | ########## | 100% 
urllib3-1.26.8       | 106 KB    | ########## | 100% 

pyopenssl-22.0.0     | 50 KB     |            |   0% 
pyopenssl-22.0.0     | 50 KB     | ########## | 100% 
pyopenssl-22.0.0     | 50 KB     | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: C:\Users\BIOCBU~1\BBS-3~1.14-\tmpdir\RTMPGD~1\Test\envs\r-reticulate

  added / updated specs:
    - numpy
    - python=3.8


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    bzip2-1.0.8                |       h8ffe710_4         149 KB  conda-forge
    ca-certificates-2021.10.8  |       h5b45459_0         176 KB  conda-forge
    intel-openmp-2022.0.0      |    h57928b3_3663         3.6 MB  conda-forge
    libblas-3.9.0              |     14_win64_mkl         5.3 MB  conda-forge
    libcblas-3.9.0             |     14_win64_mkl         5.3 MB  conda-forge
    libffi-3.4.2               |       h8ffe710_5          41 KB  conda-forge
    liblapack-3.9.0            |     14_win64_mkl         5.3 MB  conda-forge
    libzlib-1.2.11             |    h8ffe710_1014          64 KB  conda-forge
    mkl-2022.0.0               |     h0e2418a_796       181.9 MB  conda-forge
    numpy-1.22.3               |   py38h5ed9b9d_2         6.1 MB  conda-forge
    openssl-3.0.2              |       h8ffe710_1        10.1 MB  conda-forge
    pip-22.0.4                 |     pyhd8ed1ab_0         1.5 MB  conda-forge
    python-3.8.13              |hcf16a7b_0_cpython        16.9 MB  conda-forge
    python_abi-3.8             |           2_cp38           4 KB  conda-forge
    setuptools-62.1.0          |   py38haa244fe_0         1.3 MB  conda-forge
    sqlite-3.38.2              |       h8ffe710_0         1.3 MB  conda-forge
    tbb-2021.5.0               |       h2d74725_1         148 KB  conda-forge
    tk-8.6.12                  |       h8ffe710_0         3.5 MB  conda-forge
    ucrt-10.0.20348.0          |       h57928b3_0         1.2 MB  conda-forge
    vc-14.2                    |       hb210afc_6          13 KB  conda-forge
    vs2015_runtime-14.29.30037 |       h902a5da_6         1.3 MB  conda-forge
    wheel-0.37.1               |     pyhd8ed1ab_0          31 KB  conda-forge
    xz-5.2.5                   |       h62dcd97_1         211 KB  conda-forge
    ------------------------------------------------------------
                                           Total:       245.1 MB

The following NEW packages will be INSTALLED:

  bzip2              conda-forge/win-64::bzip2-1.0.8-h8ffe710_4
  ca-certificates    conda-forge/win-64::ca-certificates-2021.10.8-h5b45459_0
  intel-openmp       conda-forge/win-64::intel-openmp-2022.0.0-h57928b3_3663
  libblas            conda-forge/win-64::libblas-3.9.0-14_win64_mkl
  libcblas           conda-forge/win-64::libcblas-3.9.0-14_win64_mkl
  libffi             conda-forge/win-64::libffi-3.4.2-h8ffe710_5
  liblapack          conda-forge/win-64::liblapack-3.9.0-14_win64_mkl
  libzlib            conda-forge/win-64::libzlib-1.2.11-h8ffe710_1014
  mkl                conda-forge/win-64::mkl-2022.0.0-h0e2418a_796
  numpy              conda-forge/win-64::numpy-1.22.3-py38h5ed9b9d_2
  openssl            conda-forge/win-64::openssl-3.0.2-h8ffe710_1
  pip                conda-forge/noarch::pip-22.0.4-pyhd8ed1ab_0
  python             conda-forge/win-64::python-3.8.13-hcf16a7b_0_cpython
  python_abi         conda-forge/win-64::python_abi-3.8-2_cp38
  setuptools         conda-forge/win-64::setuptools-62.1.0-py38haa244fe_0
  sqlite             conda-forge/win-64::sqlite-3.38.2-h8ffe710_0
  tbb                conda-forge/win-64::tbb-2021.5.0-h2d74725_1
  tk                 conda-forge/win-64::tk-8.6.12-h8ffe710_0
  ucrt               conda-forge/win-64::ucrt-10.0.20348.0-h57928b3_0
  vc                 conda-forge/win-64::vc-14.2-hb210afc_6
  vs2015_runtime     conda-forge/win-64::vs2015_runtime-14.29.30037-h902a5da_6
  wheel              conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  xz                 conda-forge/win-64::xz-5.2.5-h62dcd97_1


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 3 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 3 ]
> 
> proc.time()
   user  system elapsed 
   2.92    2.50  369.21 

Example timings

Herper.Rcheck/examples_i386/Herper-Ex.timings

nameusersystemelapsed
ListCondaEnvironments 0.40 0.62455.08
ListCondaPackages0.030.167.22
SaveEnvironments 0.00 0.0711.31
UseEnvironments 0.11 0.35209.93
install_CondaSysReqs 0.19 0.3324.21
install_CondaTools0.020.006.80
search_conda0.010.007.14

Herper.Rcheck/examples_x64/Herper-Ex.timings

nameusersystemelapsed
ListCondaEnvironments 0.26 0.73696.00
ListCondaPackages 0.00 0.1612.12
SaveEnvironments 0.01 0.0115.72
UseEnvironments 0.02 0.49700.46
install_CondaSysReqs 0.07 0.3429.81
install_CondaTools 0.00 0.0013.14
search_conda 0.00 0.0012.72