| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-03-11 13:06:33 -0500 (Fri, 11 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4335 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4087 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4148 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the EventPointer package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EventPointer.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 609/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EventPointer 3.2.0 (landing page) Juan A. Ferrer-Bonsoms
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: EventPointer |
| Version: 3.2.0 |
| Command: rm -rf EventPointer.buildbin-libdir && mkdir EventPointer.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EventPointer.buildbin-libdir EventPointer_3.2.0.tar.gz |
| StartedAt: 2022-03-11 06:03:39 -0500 (Fri, 11 Mar 2022) |
| EndedAt: 2022-03-11 06:05:18 -0500 (Fri, 11 Mar 2022) |
| EllapsedTime: 99.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: EventPointer_3.2.0.zip |
| PackageFileSize: 1.372 MiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf EventPointer.buildbin-libdir && mkdir EventPointer.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EventPointer.buildbin-libdir EventPointer_3.2.0.tar.gz
###
##############################################################################
##############################################################################
install for i386
* installing *source* package 'EventPointer' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dgl.c -o dgl.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c params.c -o params.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pgl.c -o pgl.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c qdgl.c -o qdgl.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c qgl.c -o qgl.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rgl.c -o rgl.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o EventPointer.dll tmp.def dgl.o params.o pgl.o qdgl.o qgl.o rgl.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/EventPointer.buildbin-libdir/00LOCK-EventPointer/00new/EventPointer/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'EventPointer'
finding HTML links ... done
AllEvents_RNASeq html
AllEvents_RNASeq_MP html
ArrayDatamultipath html
ArraysData html
CDFfromGTF html
CDFfromGTF_Multipath html
CreateExSmatrix html
EventDetection html
EventDetectionMultipath html
EventDetection_transcriptome html
EventPointer html
EventPointer_Bootstraps html
EventPointer_IGV html
EventPointer_RNASeq html
EventPointer_RNASeq_IGV html
EventPointer_RNASeq_TranRef html
EventPointer_RNASeq_TranRef_IGV html
EventXtrans html
FindPrimers html
Fit html
GetPSI_FromTranRef html
InternalFunctions html
MyPrimers html
MyPrimers_taqman html
PSI_Statistic html
PSIss html
PrepareBam_EP html
Protein_Domain_Enrichment html
ResulTable html
SF_Prediction html
SG_RNASeq html
TxD html
getbootstrapdata html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'EventPointer' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dgl.c -o dgl.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c params.c -o params.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pgl.c -o pgl.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c qdgl.c -o qdgl.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c qgl.c -o qgl.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rgl.c -o rgl.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o EventPointer.dll tmp.def dgl.o params.o pgl.o qdgl.o qgl.o rgl.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/EventPointer.buildbin-libdir/EventPointer/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EventPointer' as EventPointer_3.2.0.zip
* DONE (EventPointer)