Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:05:11 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CiteFuse package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CiteFuse.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 323/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CiteFuse 1.6.0 (landing page) Yingxin Lin
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: CiteFuse |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:CiteFuse.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings CiteFuse_1.6.0.tar.gz |
StartedAt: 2022-04-12 06:49:30 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 06:53:34 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 244.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CiteFuse.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:CiteFuse.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings CiteFuse_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/CiteFuse.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CiteFuse/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CiteFuse’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CiteFuse’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
CiteFuse.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL CiteFuse ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘CiteFuse’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CiteFuse)
CiteFuse.Rcheck/CiteFuse-Ex.timings
name | user | system | elapsed | |
CiteFuse | 1.938 | 0.092 | 2.030 | |
DEbubblePlot | 3.873 | 0.168 | 4.041 | |
DEcomparisonPlot | 2.714 | 0.040 | 2.753 | |
DEgenes | 1.424 | 0.000 | 1.424 | |
DEgenesCross | 4.778 | 0.099 | 4.879 | |
crossSampleDoublets | 2.170 | 0.049 | 2.217 | |
geneADTnetwork | 1.973 | 0.019 | 1.994 | |
igraphClustering | 1.853 | 0.112 | 1.965 | |
importanceADT | 1.592 | 0.008 | 1.599 | |
ligandReceptorTest | 1.791 | 0.064 | 1.856 | |
normaliseExprs | 1.131 | 0.012 | 1.144 | |
plotHTO | 4.135 | 0.024 | 4.160 | |
preprocessing | 0.863 | 0.024 | 0.887 | |
readFrom10X | 0 | 0 | 0 | |
reducedDimSNF | 1.342 | 0.008 | 1.349 | |
selectDEgenes | 1.548 | 0.000 | 1.548 | |
spectralClustering | 0.804 | 0.016 | 0.820 | |
visImportance | 3.089 | 0.080 | 3.169 | |
visLigandReceptor | 1.904 | 0.048 | 1.952 | |
visualiseDim | 1.557 | 0.000 | 1.556 | |
visualiseExprs | 2.374 | 0.031 | 2.407 | |
visualiseExprsList | 1.622 | 0.007 | 1.631 | |
visualiseKNN | 0.814 | 0.013 | 0.826 | |
withinSampleDoublets | 1.845 | 0.024 | 1.869 | |