| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:21 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the CNVgears package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNVgears.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 357/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CNVgears 1.2.0 (landing page) Simone Montalbano
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CNVgears |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CNVgears_1.2.0.tar.gz && rm -rf CNVgears.buildbin-libdir && mkdir CNVgears.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVgears.buildbin-libdir CNVgears_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CNVgears_1.2.0.zip && rm CNVgears_1.2.0.tar.gz CNVgears_1.2.0.zip |
| StartedAt: 2022-04-12 04:42:11 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:44:01 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 110.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CNVgears_1.2.0.tar.gz && rm -rf CNVgears.buildbin-libdir && mkdir CNVgears.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVgears.buildbin-libdir CNVgears_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CNVgears_1.2.0.zip && rm CNVgears_1.2.0.tar.gz CNVgears_1.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
7 2112k 7 148k 0 0 565k 0 0:00:03 --:--:-- 0:00:03 565k
73 2112k 73 1547k 0 0 1225k 0 0:00:01 0:00:01 --:--:-- 1225k
100 2112k 100 2112k 0 0 1383k 0 0:00:01 0:00:01 --:--:-- 1383k
install for i386
* installing *source* package 'CNVgears' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CNVgears'
finding HTML links ... done
CNVgears html
CNVresults_to_GRanges html
chr_uniform html
cleaning_filter html
cnmops_to_CNVresults html
cnvrs_create html
cnvs_inheritance html
cohort_examples html
genic_load html
genomic_locus html
hg18_chr_arms html
hg18_start_end_centromeres html
hg19_chr_arms html
hg19_start_end_centromeres html
hg38_chr_arms html
hg38_start_end_centromeres html
immuno_regions html
inter_res_merge html
lrr_trio_plot html
markers_examples html
merge_calls html
penn_22 html
quanti_22 html
read_NGS_intervals html
read_NGS_raw html
read_finalreport_raw html
read_finalreport_snps html
read_metadt html
read_results html
read_vcf html
summary.CNVresults html
telom_centrom html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CNVgears' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNVgears' as CNVgears_1.2.0.zip
* DONE (CNVgears)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'CNVgears' successfully unpacked and MD5 sums checked