| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:16 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the BufferedMatrixMethods package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BufferedMatrixMethods.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 224/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BufferedMatrixMethods 1.58.0 (landing page) Ben Bolstad
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: BufferedMatrixMethods |
| Version: 1.58.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BufferedMatrixMethods_1.58.0.tar.gz && rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BufferedMatrixMethods_1.58.0.zip && rm BufferedMatrixMethods_1.58.0.tar.gz BufferedMatrixMethods_1.58.0.zip |
| StartedAt: 2022-04-12 04:00:31 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:01:03 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 31.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BufferedMatrixMethods_1.58.0.tar.gz && rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BufferedMatrixMethods_1.58.0.zip && rm BufferedMatrixMethods_1.58.0.tar.gz BufferedMatrixMethods_1.58.0.zip
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install for i386
* installing *source* package 'BufferedMatrixMethods' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BufferedMatrix/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init_package.c -o init_package.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BufferedMatrix/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable]
int i,j;
^
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^~~~~~~~~~~~
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^~~~~~~~~~~~
preprocess_bm.c: In function 'do_RMA_buffmat':
preprocess_bm.c:924:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
int first_ind;
^~~~~~~~~
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^~~~~~~~~~~~
At top level:
preprocess_bm.c:453:12: warning: 'min' defined but not used [-Wunused-function]
static int min(int x1,int x2){
^~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BufferedMatrixMethods.dll tmp.def init_package.o preprocess_bm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BufferedMatrixMethods.buildbin-libdir/00LOCK-BufferedMatrixMethods/00new/BufferedMatrixMethods/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BufferedMatrixMethods'
finding HTML links ... done
BM_affyDataInput html
BM_justRMA html
BM_readcelfiles html
rmapreprocess.bufferedmatrix html
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BufferedMatrixMethods' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BufferedMatrix/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init_package.c -o init_package.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BufferedMatrix/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable]
int i,j;
^
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^~~~~~~~~~~~
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^~~~~~~~~~~~
preprocess_bm.c: In function 'do_RMA_buffmat':
preprocess_bm.c:924:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
int first_ind;
^~~~~~~~~
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^~~~~~~~~~~~
At top level:
preprocess_bm.c:453:12: warning: 'min' defined but not used [-Wunused-function]
static int min(int x1,int x2){
^~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BufferedMatrixMethods.dll tmp.def init_package.o preprocess_bm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BufferedMatrixMethods' as BufferedMatrixMethods_1.58.0.zip
* DONE (BufferedMatrixMethods)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'BufferedMatrixMethods' successfully unpacked and MD5 sums checked