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This page was generated on 2022-04-13 12:06:09 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for AgiMicroRna on tokay2


To the developers/maintainers of the AgiMicroRna package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AgiMicroRna.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 37/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AgiMicroRna 2.44.0  (landing page)
Pedro Lopez-Romero
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/AgiMicroRna
git_branch: RELEASE_3_14
git_last_commit: 8b308ba
git_last_commit_date: 2021-10-26 11:54:33 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  ERROR    OK    ERROR    ERROR  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: AgiMicroRna
Version: 2.44.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AgiMicroRna.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings AgiMicroRna_2.44.0.tar.gz
StartedAt: 2022-04-12 15:28:26 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 15:28:32 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 6.0 seconds
RetCode: 1
Status:   ERROR  
CheckDir: AgiMicroRna.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AgiMicroRna.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings AgiMicroRna_2.44.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/AgiMicroRna.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AgiMicroRna/DESCRIPTION' ... OK
* this is package 'AgiMicroRna' version '2.44.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AgiMicroRna' can be installed ... ERROR
Installation failed.
See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/AgiMicroRna.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/AgiMicroRna.Rcheck/00check.log'
for details.


Installation output

AgiMicroRna.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/AgiMicroRna_2.44.0.tar.gz && rm -rf AgiMicroRna.buildbin-libdir && mkdir AgiMicroRna.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AgiMicroRna.buildbin-libdir AgiMicroRna_2.44.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL AgiMicroRna_2.44.0.zip && rm AgiMicroRna_2.44.0.tar.gz AgiMicroRna_2.44.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 41 1338k   41  560k    0     0   833k      0  0:00:01 --:--:--  0:00:01  833k
100 1338k  100 1338k    0     0  1123k      0  0:00:01  0:00:01 --:--:-- 1123k

install for i386

* installing *source* package 'AgiMicroRna' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AgiMicroRna'
    finding HTML links ... done
    HeatMapMicroRna                         html  
    PCAplotMicroRna                         html  
    RleMicroRna                             html  
    basicLimma                              html  
    boxplotMicroRna                         html  
    cvArray                                 html  
    dd.micro                                html  
    ddPROC                                  html  
    dim.uRNAList                            html  
    dimnames.uRNAList                       html  
    esetMicroRna                            html  
    filterMicroRna                          html  
    getDecideTests                          html  
    hierclusMicroRna                        html  
    mvaBASIC                                html  
    mvaMicroRna                             html  
    plotDensityMicroRna                     html  
    pvalHistogram                           html  
    qcPlots                                 html  
    readMicroRnaAFE                         html  
    readTargets                             html  
    rmaMicroRna                             html  
    significantMicroRna                     html  
    summary.uRNAList                        html  
    targets.micro                           html  
    tgsMicroRna                             html  
    tgsNormalization                        html  
    uRNAList                                html  
    writeEset                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
ERROR: loading failed
* removing 'C:/Users/biocbuild/bbs-3.14-bioc/meat/AgiMicroRna.buildbin-libdir/AgiMicroRna'

Tests output


Example timings