Back to Build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-10-16 15:58:43 -0400 (Sat, 16 Oct 2021).
To the developers/maintainers of the QDNAseq.hg19 package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 299/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
QDNAseq.hg19 1.22.0 (landing page) Daoud Sie
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: QDNAseq.hg19 |
Version: 1.22.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:QDNAseq.hg19.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings QDNAseq.hg19_1.22.0.tar.gz |
StartedAt: 2021-10-16 13:48:53 -0400 (Sat, 16 Oct 2021) |
EndedAt: 2021-10-16 13:51:14 -0400 (Sat, 16 Oct 2021) |
EllapsedTime: 141.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: QDNAseq.hg19.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:QDNAseq.hg19.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings QDNAseq.hg19_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/QDNAseq.hg19.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘QDNAseq.hg19/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘QDNAseq.hg19’ version ‘1.22.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘QDNAseq.hg19’ can be installed ... OK * checking installed package size ... NOTE installed size is 35.4Mb sub-directories of 1Mb or more: data 35.3Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed hg19.1kbp.SR50 17.414 0.296 17.71 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.13-data-experiment/meat/QDNAseq.hg19.Rcheck/00check.log’ for details.
QDNAseq.hg19.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL QDNAseq.hg19 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘QDNAseq.hg19’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (QDNAseq.hg19)
QDNAseq.hg19.Rcheck/QDNAseq.hg19-Ex.timings
name | user | system | elapsed | |
QDNAseq.hg19-package | 0.745 | 0.016 | 0.761 | |
hg19.1000kbp.SR50 | 0.020 | 0.003 | 0.023 | |
hg19.100kbp.SR50 | 0.160 | 0.008 | 0.168 | |
hg19.10kbp.SR50 | 1.850 | 0.027 | 1.878 | |
hg19.15kbp.SR50 | 1.447 | 0.031 | 1.479 | |
hg19.1kbp.SR50 | 17.414 | 0.296 | 17.710 | |
hg19.30kbp.SR50 | 0.469 | 0.031 | 0.500 | |
hg19.500kbp.SR50 | 0.036 | 0.000 | 0.037 | |
hg19.50kbp.SR50 | 0.278 | 0.004 | 0.282 | |
hg19.5kbp.SR50 | 2.974 | 0.076 | 3.050 | |