Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:56 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the weaver package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/weaver.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2017/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
weaver 1.58.0 (landing page) Seth Falcon
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: weaver |
Version: 1.58.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:weaver.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings weaver_1.58.0.tar.gz |
StartedAt: 2021-10-14 12:01:54 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 12:02:09 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 14.8 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: weaver.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:weaver.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings weaver_1.58.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/weaver.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘weaver/DESCRIPTION’ ... OK * this is package ‘weaver’ version ‘1.58.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘weaver’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘codetools’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘codetools’ ‘digest’ ‘tools’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE cache_expr: no visible binding for global variable ‘DEPS’ eval_and_cache: no visible global function definition for ‘sessionInfo’ findDeps: no visible global function definition for ‘findGlobals’ findDeps: no visible global function definition for ‘findLocals’ get_expr_hash: no visible global function definition for ‘digest’ make_cache_expr : <local> : <anonymous>: no visible binding for global variable ‘DEPS’ weaver: no visible binding for global variable ‘RweaveLatexWritedoc’ weaver: no visible binding for global variable ‘RweaveLatexOptions’ weaverLatexFinish: no visible global function definition for ‘RweaveLatexFinish’ weaverLatexSetup: no visible global function definition for ‘RweaveLatexSetup’ weaverLatexSetup: no visible global function definition for ‘RweaveLatexOptions’ Undefined global functions or variables: DEPS RweaveLatexFinish RweaveLatexOptions RweaveLatexSetup RweaveLatexWritedoc digest findGlobals findLocals sessionInfo Consider adding importFrom("utils", "RweaveLatexFinish", "RweaveLatexOptions", "RweaveLatexSetup", "RweaveLatexWritedoc", "sessionInfo") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... WARNING Found the following file(s) containing GNU extensions: inst/extdata/Makefile Portable Makefiles do not use GNU extensions such as +=, :=, $(shell), $(wildcard), ifeq ... endif, .NOTPARALLEL See section ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. * checking include directives in Makefiles ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 3 NOTEs See ‘/home/biocbuild/bbs-3.13-bioc/meat/weaver.Rcheck/00check.log’ for details.
weaver.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL weaver ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘weaver’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (weaver)
weaver.Rcheck/weaver-Ex.timings
name | user | system | elapsed | |
weaver | 0 | 0 | 0 | |