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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/transite_1.10.0.tar.gz && rm -rf transite.buildbin-libdir && mkdir transite.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=transite.buildbin-libdir transite_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL transite_1.10.0.zip && rm transite_1.10.0.tar.gz transite_1.10.0.zip
###
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install for i386

* installing *source* package 'transite' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c scoring.cpp -o scoring.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o transite.dll tmp.def RcppExports.o scoring.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/transite.buildbin-libdir/00LOCK-transite/00new/transite/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'transite'
    finding HTML links ... done
    RBPMotif-class                          html  
    SpectrumScore-class                     html  
    calculate_kmer_enrichment               html  
    calculate_local_consistency             html  
    calculate_motif_enrichment              html  
    calculate_transcript_mc                 html  
    check_kmers                             html  
    classify_spectrum                       html  
    compute_kmer_enrichment                 html  
    count_homopolymer_corrected_kmers       html  
    create_kmer_motif                       html  
    create_matrix_motif                     html  
    draw_volcano_plot                       html  
    estimate_significance                   html  
    estimate_significance_core              html  
    ge                                      html  
    generate_iupac_by_kmers                 html  
    generate_iupac_by_matrix                html  
    generate_kmers                          html  
    generate_kmers_from_iupac               html  
    generate_permuted_enrichments           html  
    geometric_mean                          html  
    get_motif_by_id                         html  
    get_motif_by_rbp                        html  
    get_motifs                              html  
    get_motifs_meta_info                    html  
    get_ppm                                 html  
    init_iupac_lookup_table                 html  
    kmers_enrichment                        html  
    motifs                                  html  
    p_combine                               html  
    run_kmer_spma                           html  
    run_kmer_tsma                           html  
    run_matrix_spma                         html  
    run_matrix_tsma                         html  
    score_sequences                         html  
    score_spectrum                          html  
    score_transcripts                       html  
    score_transcripts_single_motif          html  
    set_motifs                              html  
    subdivide_data                          html  
    toy_motif_matrix                        html  
    transite                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'transite' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c scoring.cpp -o scoring.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o transite.dll tmp.def RcppExports.o scoring.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/transite.buildbin-libdir/transite/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'transite' as transite_1.10.0.zip
* DONE (transite)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'transite' successfully unpacked and MD5 sums checked