Jianhong Ou
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/trackViewer |
| git_branch: RELEASE_3_13 |
| git_last_commit: 84fca6e |
| git_last_commit_date: 2021-07-06 12:09:25 -0400 (Tue, 06 Jul 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:26 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the trackViewer package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trackViewer.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1942/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| trackViewer 1.28.1 (landing page) Jianhong Ou
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: trackViewer |
| Version: 1.28.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/trackViewer_1.28.1.tar.gz && rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trackViewer.buildbin-libdir trackViewer_1.28.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL trackViewer_1.28.1.zip && rm trackViewer_1.28.1.tar.gz trackViewer_1.28.1.zip |
| StartedAt: 2021-10-14 10:54:50 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:56:52 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 121.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/trackViewer_1.28.1.tar.gz && rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trackViewer.buildbin-libdir trackViewer_1.28.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL trackViewer_1.28.1.zip && rm trackViewer_1.28.1.tar.gz trackViewer_1.28.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
98 1788k 98 1765k 0 0 1759k 0 0:00:01 0:00:01 --:--:-- 1761k
100 1788k 100 1788k 0 0 1781k 0 0:00:01 0:00:01 --:--:-- 1783k
install for i386
* installing *source* package 'trackViewer' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hic.cpp -o hic.o
hic.cpp: In member function 'void HicFileHead::readHeader(std::ifstream&)':
hic.cpp:247:16: warning: unused variable 'nviPosition' [-Wunused-variable]
long nviPosition = readLong(ifile);
^~~~~~~~~~~
hic.cpp:248:16: warning: unused variable 'nviLength' [-Wunused-variable]
long nviLength = readLong(ifile);
^~~~~~~~~
hic.cpp: In function 'std::vector<cellData> getByCoor(std::__cxx11::string, int, int, std::__cxx11::string, int, int, int, std::__cxx11::string, std::__cxx11::string, HicFileHead&, HicFileFoot&, std::ifstream&)':
hic.cpp:751:19: warning: '*((void*)& bd +8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
for(int i=0; i<data.nResolutions; i++){
~^~~~~~~~~~~~~~~~~~
hic.cpp:797:10: note: '*((void*)& bd +8)' was declared here
body bd;
^~
hic.cpp:797:10: warning: '*((void*)& bd +12)' may be used uninitialized in this function [-Wmaybe-uninitialized]
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o trackViewer.dll tmp.def RcppExports.o hic.o -lz -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/trackViewer.buildbin-libdir/00LOCK-trackViewer/00new/trackViewer/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'trackViewer'
finding HTML links ... done
GRoperator html
addArrowMark html
addGuideLine html
browseTracks-shiny html
browseTracks html
coverageGR html
dandelion.plot html
geneModelFromTxdb html
geneTrack html
getCurTrackViewport html
getGeneIDsFromTxDb html
getLocation html
gi2track html
gieStain html
gridPlot html
ideogramPlot html
importBam html
importData html
importGInteractions html
importScSeqScore html
importScore html
listChromosomes html
listResolutions html
loadIdeogram html
lolliplot html
optimizeStyle html
parse2GRanges html
parseWIG html
plotGInteractions html
plotGRanges html
plotIdeo html
plotOneIdeo html
pos-class html
trackList-class html
trackStyle-class html
trackViewer-package html
trackViewerStyle-class html
viewGene html
viewTracks html
xscale-class html
yaxisStyle-class html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'trackViewer' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hic.cpp -o hic.o
hic.cpp: In member function 'void HicFileHead::readHeader(std::ifstream&)':
hic.cpp:247:16: warning: unused variable 'nviPosition' [-Wunused-variable]
long nviPosition = readLong(ifile);
^~~~~~~~~~~
hic.cpp:248:16: warning: unused variable 'nviLength' [-Wunused-variable]
long nviLength = readLong(ifile);
^~~~~~~~~
hic.cpp: In function 'std::vector<cellData> getByCoor(std::__cxx11::string, int, int, std::__cxx11::string, int, int, int, std::__cxx11::string, std::__cxx11::string, HicFileHead&, HicFileFoot&, std::ifstream&)':
hic.cpp:751:19: warning: '*((void*)& bd +8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
for(int i=0; i<data.nResolutions; i++){
~^~~~~~~~~~~~~~~~~~
hic.cpp:797:10: note: '*((void*)& bd +8)' was declared here
body bd;
^~
hic.cpp:797:10: warning: '*((void*)& bd +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o trackViewer.dll tmp.def RcppExports.o hic.o -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/trackViewer.buildbin-libdir/trackViewer/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'trackViewer' as trackViewer_1.28.1.zip
* DONE (trackViewer)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'trackViewer' successfully unpacked and MD5 sums checked