| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:25 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the ternarynet package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ternarynet.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1906/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ternarynet 1.36.0 (landing page) McCall N. Matthew
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ternarynet |
| Version: 1.36.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ternarynet_1.36.0.tar.gz && rm -rf ternarynet.buildbin-libdir && mkdir ternarynet.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ternarynet.buildbin-libdir ternarynet_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ternarynet_1.36.0.zip && rm ternarynet_1.36.0.tar.gz ternarynet_1.36.0.zip |
| StartedAt: 2021-10-14 07:22:12 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 07:24:46 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 153.9 seconds |
| RetCode: 0 |
| Status: OK |
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ternarynet_1.36.0.tar.gz && rm -rf ternarynet.buildbin-libdir && mkdir ternarynet.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ternarynet.buildbin-libdir ternarynet_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ternarynet_1.36.0.zip && rm ternarynet_1.36.0.tar.gz ternarynet_1.36.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 41751 100 41751 0 0 267k 0 --:--:-- --:--:-- --:--:-- 270k
install for i386
* installing *source* package 'ternarynet' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c array.c -o array.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c gn.c -o gn.o
gn.c: In function 'score':
gn.c:506: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
gn.c:513: warning: ignoring #pragma omp atomic [-Wunknown-pragmas]
#pragma omp atomic
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c gn_Rwrap.c -o gn_Rwrap.o
In file included from C:/Users/BIOCBU~1/BBS-3~1.13-/R/include/R.h:82,
from gn_Rwrap.h:4,
from gn_Rwrap.c:1:
C:/Users/BIOCBU~1/BBS-3~1.13-/R/include/R_ext/Arith.h:58:18: warning: 'R_NaReal' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
#define NA_REAL R_NaReal
^~~~~~~~
C:/Users/BIOCBU~1/BBS-3~1.13-/R/include/Rmath.h:647:17: note: in expansion of macro 'NA_REAL'
R_EXTERN double NA_REAL;
^~~~~~~
In file included from gn_Rwrap.c:9:
C:/Users/BIOCBU~1/BBS-3~1.13-/R/include/Rmath.h:648:17: warning: 'R_PosInf' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
R_EXTERN double R_PosInf;
^~~~~~~~
C:/Users/BIOCBU~1/BBS-3~1.13-/R/include/Rmath.h:649:17: warning: 'R_NegInf' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
R_EXTERN double R_NegInf;
^~~~~~~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tnetfit.cc -o tnetfit.o
tnetfit.cc: In function 'SEXPREC* tnetfit(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tnetfit.cc:24:9: warning: variable 'perturbationType' set but not used [-Wunused-but-set-variable]
int perturbationType, scoreType, backupStage, maxStage, maxTransition;
^~~~~~~~~~~~~~~~
tnetfit.cc:24:27: warning: variable 'scoreType' set but not used [-Wunused-but-set-variable]
int perturbationType, scoreType, backupStage, maxStage, maxTransition;
^~~~~~~~~
tnetfit.cc:24:38: warning: variable 'backupStage' set but not used [-Wunused-but-set-variable]
int perturbationType, scoreType, backupStage, maxStage, maxTransition;
^~~~~~~~~~~
tnetfit.cc:73:39: warning: unused variable 'tempi' [-Wunused-variable]
int nOutcomes=3, l0, stage_count, tempi, jtrans, nTransition;
^~~~~
tnetfit.cc:311:19: warning: 'newScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_VECTOR_ELT(Routput, 10, ScalarReal(newScore));
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tnetfit.cc:207:25: warning: 'muci_old' may be used uninitialized in this function [-Wmaybe-uninitialized]
convergence = (muci-muci_old)/sigma0;
~~~~~^~~~~~~~~~
tnetfit.cc:202:36: warning: 'sigmaci' may be used uninitialized in this function [-Wmaybe-uninitialized]
sigmaci = rho*sigmaRaw + (1-rho)*sigmaci;
~~~~~~~^~~~~~~~
tnetfit.cc:207:18: warning: 'sigma0' may be used uninitialized in this function [-Wmaybe-uninitialized]
convergence = (muci-muci_old)/sigma0;
~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tnetfuncs.cc -o tnetfuncs.o
tnetfuncs.cc: In function 'double AttractorDistanceForced(int, int, int, int, double, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:427:5: warning: unused variable 'tableWidth' [-Wunused-variable]
int tableWidth = powi(nOutcomes,maxDegree);
^~~~~~~~~~
tnetfuncs.cc:435:5: warning: unused variable 'ipause' [-Wunused-variable]
int ipause;
^~~~~~
tnetfuncs.cc: In function 'double initialTemp(double, int, int, int, int, int, double, double, double, int, const double*, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:517:6: warning: unused variable 'ipause' [-Wunused-variable]
int ipause;
^~~~~~
tnetfuncs.cc:521:16: warning: unused variable 'i' [-Wunused-variable]
int m1, m2, i;
^
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tnetpost.cc -o tnetpost.o
tnetpost.cc: In function 'SEXPREC* tnetpost(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tnetpost.cc:25:9: warning: unused variable 'ipause' [-Wunused-variable]
int ipause;
^~~~~~
tnetpost.cc:27:9: warning: unused variable 'm0fit' [-Wunused-variable]
int m0fit;
^~~~~
tnetpost.cc:28:32: warning: variable 'minScore' set but not used [-Wunused-but-set-variable]
double newScore, oldScore, minScore, finalScore;
^~~~~~~~
tnetpost.cc:28:42: warning: unused variable 'finalScore' [-Wunused-variable]
double newScore, oldScore, minScore, finalScore;
^~~~~~~~~~
tnetpost.cc:30:9: warning: unused variable 'l0' [-Wunused-variable]
int l0, stage_count, tempi, jtrans, nTransition;
^~
tnetpost.cc:30:13: warning: unused variable 'stage_count' [-Wunused-variable]
int l0, stage_count, tempi, jtrans, nTransition;
^~~~~~~~~~~
tnetpost.cc:30:26: warning: unused variable 'tempi' [-Wunused-variable]
int l0, stage_count, tempi, jtrans, nTransition;
^~~~~
tnetpost.cc:30:33: warning: unused variable 'jtrans' [-Wunused-variable]
int l0, stage_count, tempi, jtrans, nTransition;
^~~~~~
tnetpost.cc:30:41: warning: unused variable 'nTransition' [-Wunused-variable]
int l0, stage_count, tempi, jtrans, nTransition;
^~~~~~~~~~~
tnetpost.cc:36:21: warning: variable 'xSeedFit' set but not used [-Wunused-but-set-variable]
int m0, mdelta, xSeedFit;
^~~~~~~~
tnetpost.cc:38:9: warning: variable 'perturbationType' set but not used [-Wunused-but-set-variable]
int perturbationType, scoreType, backupStage;
^~~~~~~~~~~~~~~~
tnetpost.cc:38:27: warning: variable 'scoreType' set but not used [-Wunused-but-set-variable]
int perturbationType, scoreType, backupStage;
^~~~~~~~~
tnetpost.cc:38:38: warning: variable 'backupStage' set but not used [-Wunused-but-set-variable]
int perturbationType, scoreType, backupStage;
^~~~~~~~~~~
tnetpost.cc:39:9: warning: variable 'maxStage' set but not used [-Wunused-but-set-variable]
int maxStage, maxTransition;
^~~~~~~~
tnetpost.cc:39:19: warning: variable 'maxTransition' set but not used [-Wunused-but-set-variable]
int maxStage, maxTransition;
^~~~~~~~~~~~~
tnetpost.cc:40:12: warning: variable 'epsilon' set but not used [-Wunused-but-set-variable]
double epsilon, chi0, delta, rho;
^~~~~~~
tnetpost.cc:40:21: warning: variable 'chi0' set but not used [-Wunused-but-set-variable]
double epsilon, chi0, delta, rho;
^~~~
tnetpost.cc:40:27: warning: variable 'delta' set but not used [-Wunused-but-set-variable]
double epsilon, chi0, delta, rho;
^~~~~
tnetpost.cc:40:34: warning: variable 'rho' set but not used [-Wunused-but-set-variable]
double epsilon, chi0, delta, rho;
^~~
In file included from tnetpost.cc:14:
C:/Users/BIOCBU~1/BBS-3~1.13-/R/include/Rmath.h:212:15: warning: variable 'Rf_beta' set but not used [-Wunused-but-set-variable]
#define beta Rf_beta
^~~~~~~
tnetpost.cc:41:9: note: in expansion of macro 'beta'
int beta;
^~~~
tnetpost.cc:44:9: warning: variable 'ne' set but not used [-Wunused-but-set-variable]
int ne, maxDegree;
^~
tnetpost.cc:150:10: warning: variable 'minDump' set but not used [-Wunused-but-set-variable]
bool minDump = true;
^~~~~~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c util.c -o util.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ternarynet.dll tmp.def array.o gn.o gn_Rwrap.o init.o tnetfit.o tnetfuncs.o tnetpost.o util.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/ternarynet.buildbin-libdir/00LOCK-ternarynet/00new/ternarynet/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ternarynet'
finding HTML links ... done
attractorSummary html
graphPosterior html
parallelFit html
plotFit html
plotPost html
plotTraces html
predictAttractor html
simulateSteadyState html
ternaryFit-class html
ternaryFitParameters-class html
ternaryPost-class html
tnetfit html
tnetpost html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ternarynet' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c array.c -o array.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c gn.c -o gn.o
gn.c: In function 'score':
gn.c:506: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
gn.c:513: warning: ignoring #pragma omp atomic [-Wunknown-pragmas]
#pragma omp atomic
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c gn_Rwrap.c -o gn_Rwrap.o
In file included from C:/Users/BIOCBU~1/BBS-3~1.13-/R/include/R.h:82,
from gn_Rwrap.h:4,
from gn_Rwrap.c:1:
C:/Users/BIOCBU~1/BBS-3~1.13-/R/include/R_ext/Arith.h:58:18: warning: 'R_NaReal' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
#define NA_REAL R_NaReal
^~~~~~~~
C:/Users/BIOCBU~1/BBS-3~1.13-/R/include/Rmath.h:647:17: note: in expansion of macro 'NA_REAL'
R_EXTERN double NA_REAL;
^~~~~~~
In file included from gn_Rwrap.c:9:
C:/Users/BIOCBU~1/BBS-3~1.13-/R/include/Rmath.h:648:17: warning: 'R_PosInf' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
R_EXTERN double R_PosInf;
^~~~~~~~
C:/Users/BIOCBU~1/BBS-3~1.13-/R/include/Rmath.h:649:17: warning: 'R_NegInf' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
R_EXTERN double R_NegInf;
^~~~~~~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tnetfit.cc -o tnetfit.o
tnetfit.cc: In function 'SEXPREC* tnetfit(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tnetfit.cc:24:9: warning: variable 'perturbationType' set but not used [-Wunused-but-set-variable]
int perturbationType, scoreType, backupStage, maxStage, maxTransition;
^~~~~~~~~~~~~~~~
tnetfit.cc:24:27: warning: variable 'scoreType' set but not used [-Wunused-but-set-variable]
int perturbationType, scoreType, backupStage, maxStage, maxTransition;
^~~~~~~~~
tnetfit.cc:24:38: warning: variable 'backupStage' set but not used [-Wunused-but-set-variable]
int perturbationType, scoreType, backupStage, maxStage, maxTransition;
^~~~~~~~~~~
tnetfit.cc:73:39: warning: unused variable 'tempi' [-Wunused-variable]
int nOutcomes=3, l0, stage_count, tempi, jtrans, nTransition;
^~~~~
tnetfit.cc:311:19: warning: 'newScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_VECTOR_ELT(Routput, 10, ScalarReal(newScore));
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tnetfit.cc:207:25: warning: 'muci_old' may be used uninitialized in this function [-Wmaybe-uninitialized]
convergence = (muci-muci_old)/sigma0;
~~~~~^~~~~~~~~~
tnetfit.cc:202:36: warning: 'sigmaci' may be used uninitialized in this function [-Wmaybe-uninitialized]
sigmaci = rho*sigmaRaw + (1-rho)*sigmaci;
~~~~~~~^~~~~~~~
tnetfit.cc:207:18: warning: 'sigma0' may be used uninitialized in this function [-Wmaybe-uninitialized]
convergence = (muci-muci_old)/sigma0;
~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tnetfuncs.cc -o tnetfuncs.o
tnetfuncs.cc: In function 'double AttractorDistanceForced(int, int, int, int, double, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:427:5: warning: unused variable 'tableWidth' [-Wunused-variable]
int tableWidth = powi(nOutcomes,maxDegree);
^~~~~~~~~~
tnetfuncs.cc:435:5: warning: unused variable 'ipause' [-Wunused-variable]
int ipause;
^~~~~~
tnetfuncs.cc: In function 'double initialTemp(double, int, int, int, int, int, double, double, double, int, const double*, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:517:6: warning: unused variable 'ipause' [-Wunused-variable]
int ipause;
^~~~~~
tnetfuncs.cc:521:16: warning: unused variable 'i' [-Wunused-variable]
int m1, m2, i;
^
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tnetpost.cc -o tnetpost.o
tnetpost.cc: In function 'SEXPREC* tnetpost(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tnetpost.cc:25:9: warning: unused variable 'ipause' [-Wunused-variable]
int ipause;
^~~~~~
tnetpost.cc:27:9: warning: unused variable 'm0fit' [-Wunused-variable]
int m0fit;
^~~~~
tnetpost.cc:28:32: warning: variable 'minScore' set but not used [-Wunused-but-set-variable]
double newScore, oldScore, minScore, finalScore;
^~~~~~~~
tnetpost.cc:28:42: warning: unused variable 'finalScore' [-Wunused-variable]
double newScore, oldScore, minScore, finalScore;
^~~~~~~~~~
tnetpost.cc:30:9: warning: unused variable 'l0' [-Wunused-variable]
int l0, stage_count, tempi, jtrans, nTransition;
^~
tnetpost.cc:30:13: warning: unused variable 'stage_count' [-Wunused-variable]
int l0, stage_count, tempi, jtrans, nTransition;
^~~~~~~~~~~
tnetpost.cc:30:26: warning: unused variable 'tempi' [-Wunused-variable]
int l0, stage_count, tempi, jtrans, nTransition;
^~~~~
tnetpost.cc:30:33: warning: unused variable 'jtrans' [-Wunused-variable]
int l0, stage_count, tempi, jtrans, nTransition;
^~~~~~
tnetpost.cc:30:41: warning: unused variable 'nTransition' [-Wunused-variable]
int l0, stage_count, tempi, jtrans, nTransition;
^~~~~~~~~~~
tnetpost.cc:36:21: warning: variable 'xSeedFit' set but not used [-Wunused-but-set-variable]
int m0, mdelta, xSeedFit;
^~~~~~~~
tnetpost.cc:38:9: warning: variable 'perturbationType' set but not used [-Wunused-but-set-variable]
int perturbationType, scoreType, backupStage;
^~~~~~~~~~~~~~~~
tnetpost.cc:38:27: warning: variable 'scoreType' set but not used [-Wunused-but-set-variable]
int perturbationType, scoreType, backupStage;
^~~~~~~~~
tnetpost.cc:38:38: warning: variable 'backupStage' set but not used [-Wunused-but-set-variable]
int perturbationType, scoreType, backupStage;
^~~~~~~~~~~
tnetpost.cc:39:9: warning: variable 'maxStage' set but not used [-Wunused-but-set-variable]
int maxStage, maxTransition;
^~~~~~~~
tnetpost.cc:39:19: warning: variable 'maxTransition' set but not used [-Wunused-but-set-variable]
int maxStage, maxTransition;
^~~~~~~~~~~~~
tnetpost.cc:40:12: warning: variable 'epsilon' set but not used [-Wunused-but-set-variable]
double epsilon, chi0, delta, rho;
^~~~~~~
tnetpost.cc:40:21: warning: variable 'chi0' set but not used [-Wunused-but-set-variable]
double epsilon, chi0, delta, rho;
^~~~
tnetpost.cc:40:27: warning: variable 'delta' set but not used [-Wunused-but-set-variable]
double epsilon, chi0, delta, rho;
^~~~~
tnetpost.cc:40:34: warning: variable 'rho' set but not used [-Wunused-but-set-variable]
double epsilon, chi0, delta, rho;
^~~
In file included from tnetpost.cc:14:
C:/Users/BIOCBU~1/BBS-3~1.13-/R/include/Rmath.h:212:15: warning: variable 'Rf_beta' set but not used [-Wunused-but-set-variable]
#define beta Rf_beta
^~~~~~~
tnetpost.cc:41:9: note: in expansion of macro 'beta'
int beta;
^~~~
tnetpost.cc:44:9: warning: variable 'ne' set but not used [-Wunused-but-set-variable]
int ne, maxDegree;
^~
tnetpost.cc:150:10: warning: variable 'minDump' set but not used [-Wunused-but-set-variable]
bool minDump = true;
^~~~~~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c util.c -o util.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ternarynet.dll tmp.def array.o gn.o gn_Rwrap.o init.o tnetfit.o tnetfuncs.o tnetpost.o util.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/ternarynet.buildbin-libdir/ternarynet/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ternarynet' as ternarynet_1.36.0.zip
* DONE (ternarynet)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'ternarynet' successfully unpacked and MD5 sums checked