Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:24 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the synapter package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/synapter.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1883/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
synapter 2.16.0 (landing page) Laurent Gatto
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: synapter |
Version: 2.16.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/synapter_2.16.0.tar.gz && rm -rf synapter.buildbin-libdir && mkdir synapter.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synapter.buildbin-libdir synapter_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL synapter_2.16.0.zip && rm synapter_2.16.0.tar.gz synapter_2.16.0.zip |
StartedAt: 2021-10-14 09:41:38 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 09:45:15 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 217.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/synapter_2.16.0.tar.gz && rm -rf synapter.buildbin-libdir && mkdir synapter.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synapter.buildbin-libdir synapter_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL synapter_2.16.0.zip && rm synapter_2.16.0.tar.gz synapter_2.16.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1167k 100 1167k 0 0 2565k 0 --:--:-- --:--:-- --:--:-- 2570k install for i386 * installing *source* package 'synapter' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'synapter' finding HTML links ... done MasterFdrResults-class html MasterPeptides-class html Synapter html finding level-2 HTML links ... done createUniquePeptideDbRds html defunct html estimateMasterFdr html inspectPeptideScores html makeMaster html plotCrossMatching html requantify html rescaleForTop3 html synapter-package html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/synapter.buildbin-libdir/00LOCK-synapter/00new/synapter/help/synapter.html synapterGuide html synapterPlgsAgreement html synapterTinyData html synergise html synergise2 html ** building package indices ** installing vignettes 'fragmentmatching.Rmd' using 'UTF-8' 'synapter.Rmd' using 'UTF-8' 'synapter2.Rmd' using 'UTF-8' ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'synapter' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'synapter' as synapter_2.16.0.zip * DONE (synapter) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'synapter' successfully unpacked and MD5 sums checked