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This page was generated on 2021-10-15 15:06:55 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the survcomp package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/survcomp.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1873/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
survcomp 1.42.0 (landing page) Benjamin Haibe-Kains
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: survcomp |
Version: 1.42.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data survcomp |
StartedAt: 2021-10-14 15:13:43 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 15:14:18 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 34.4 seconds |
RetCode: 0 |
Status: OK |
PackageFile: survcomp_1.42.0.tar.gz |
PackageFileSize: 869.9 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data survcomp ### ############################################################################## ############################################################################## * checking for file ‘survcomp/DESCRIPTION’ ... OK * preparing ‘survcomp’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to process help pages * building the PDF package manual Hmm ... looks like a package Converting Rd files to LaTeX .... Creating pdf output from LaTeX ... 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(/usr/local/texlive/2019/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/local/texlive/2019/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/local/texlive/2019/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/local/texlive/2019/texmf-dist/tex/generic/gettitlestring/gettitlestring.s ty)) (/usr/local/texlive/2019/texmf-dist/tex/latex/inconsolata/t1zi4.fd) Overfull \hbox (77.29225pt too wide) in paragraph at lines 22--23 \T1/ptm/m/n/10 Kains \T1/zi4/m/n/10 <benjamin.haibe.kains@utoronto.ca>\T1/ptm/m /n/10 , Markus Schroeder \T1/zi4/m/n/10 <markus.schroeder@ucdconnect.ie>\T1/ptm /m/n/10 , Catha- (/usr/local/texlive/2019/texmf-dist/tex/latex/psnfss/t1phv.fd LaTeX Warning: Font shape declaration has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 20. LaTeX Warning: Font shape declaration has incorrect series value `mc'. 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[4] [5] (/usr/local/texlive/2019/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [6] [7] [8] [9] [10] [11] Overfull \hbox (2.15596pt too wide) in paragraph at lines 527--528 []\T1/ptm/m/n/10 The func-tion com-bines sev-eral es-ti-ma-tors us-ing meta-ana lytical for-mula to com-pute a meta-estimate. [12] [13] Overfull \hbox (14.50804pt too wide) in paragraph at lines 665--666 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of \T1/zi4/m/n/10 "two.sided" [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Overfull \hbox (3.50652pt too wide) in paragraph at lines 1139--1140 \T1/ptm/m/n/10 and ran-dom ef-fects meta-analysis for two-sample com-par-isons and cu-mu-la-tive meta-analyses. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.jackknife} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.survivalROC} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.survivalROC.C} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.prodlim} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.plot} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.sbrier} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.test} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.survfit} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.metaplot} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.meta.colors} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.normOrder} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.summary.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxphCPE} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.phcpe} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rcorr.cens} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.t.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph.object} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one {/usr/local/texlive/2019/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/us r/local/texlive/2019/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/local/texlive /2019/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/local/texlive/20 19/texmf-dist/fonts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/local/t exlive/2019/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/local/te xlive/2019/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/local/texlive/2 019/texmf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/local/texlive/2019/texmf- dist/fonts/type1/urw/times/utmr8a.pfb></usr/local/texlive/2019/texmf-dist/fonts /type1/urw/times/utmr8a.pfb></usr/local/texlive/2019/texmf-dist/fonts/type1/urw /times/utmri8a.pfb> Output written on Rd2.pdf (58 pages, 205103 bytes). 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This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode LaTeX2e <2020-02-02> patch level 5 L3 programming layer <2020-02-25> (./Rd2.tex (/usr/local/texlive/2019/texmf-dist/tex/latex/base/book.cls Document Class: book 2019/12/20 v1.4l Standard LaTeX document class (/usr/local/texlive/2019/texmf-dist/tex/latex/base/bk10.clo)) (/Library/Frameworks/R.framework/Resources/share/texmf/tex/latex/Rd.sty (/usr/local/texlive/2019/texmf-dist/tex/latex/base/ifthen.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/tools/longtable.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/tools/bm.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/base/alltt.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/url/url.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/base/textcomp.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/base/fontenc.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/psnfss/times.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe) (/usr/local/texlive/2019/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/local/texlive/2019/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/local/texlive/2019/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/local/texlive/2019/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/local/texlive/2019/texmf-dist/tex/latex/graphics/color.sty (/usr/local/texlive/2019/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/local/texlive/2019/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/local/texlive/2019/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/local/texlive/2019/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/pdftexcmds/pdftexcmds.sty (/usr/local/texlive/2019/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/local/texlive/2019/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/local/texlive/2019/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/local/texlive/2019/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/local/texlive/2019/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/local/texlive/2019/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/local/texlive/2019/texmf-dist/tex/generic/bitset/bitset.sty (/usr/local/texlive/2019/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/local/texlive/2019/texmf-dist/tex/generic/atbegshi/atbegshi.sty)) (/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/local/texlive/2019/texmf-dist/tex/latex/atveryend/atveryend.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/local/texlive/2019/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty ))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 377. 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[58] (/private/tmp/RtmpuH88Ms/Rbuilda440709a9fc0/survcomp/.Rd2pdf42048/Rd2.aux) ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.jackknife} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.survivalROC} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.survivalROC.C} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.prodlim} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.plot} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.sbrier} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.test} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.survfit} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.metaplot} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.meta.colors} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.normOrder} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.summary.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxphCPE} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.phcpe} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rcorr.cens} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.t.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph.object} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one {/usr/local/texlive/2019/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/us r/local/texlive/2019/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/local/texlive /2019/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/local/texlive/20 19/texmf-dist/fonts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/local/t exlive/2019/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/local/te xlive/2019/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/local/texlive/2 019/texmf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/local/texlive/2019/texmf- dist/fonts/type1/urw/times/utmr8a.pfb></usr/local/texlive/2019/texmf-dist/fonts /type1/urw/times/utmr8a.pfb></usr/local/texlive/2019/texmf-dist/fonts/type1/urw /times/utmri8a.pfb> Output written on Rd2.pdf (58 pages, 209970 bytes). 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This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode LaTeX2e <2020-02-02> patch level 5 L3 programming layer <2020-02-25> (./Rd2.tex (/usr/local/texlive/2019/texmf-dist/tex/latex/base/book.cls Document Class: book 2019/12/20 v1.4l Standard LaTeX document class (/usr/local/texlive/2019/texmf-dist/tex/latex/base/bk10.clo)) (/Library/Frameworks/R.framework/Resources/share/texmf/tex/latex/Rd.sty (/usr/local/texlive/2019/texmf-dist/tex/latex/base/ifthen.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/tools/longtable.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/tools/bm.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/base/alltt.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/url/url.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/base/textcomp.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/base/fontenc.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/psnfss/times.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe) (/usr/local/texlive/2019/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/local/texlive/2019/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/local/texlive/2019/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/local/texlive/2019/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/local/texlive/2019/texmf-dist/tex/latex/graphics/color.sty (/usr/local/texlive/2019/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/local/texlive/2019/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/local/texlive/2019/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/local/texlive/2019/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/pdftexcmds/pdftexcmds.sty (/usr/local/texlive/2019/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/local/texlive/2019/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/local/texlive/2019/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/local/texlive/2019/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/local/texlive/2019/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/local/texlive/2019/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/local/texlive/2019/texmf-dist/tex/generic/bitset/bitset.sty (/usr/local/texlive/2019/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/local/texlive/2019/texmf-dist/tex/generic/atbegshi/atbegshi.sty)) (/usr/local/texlive/2019/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/local/texlive/2019/texmf-dist/tex/latex/atveryend/atveryend.sty) (/usr/local/texlive/2019/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/local/texlive/2019/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty ))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 377. 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LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.jackknife} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.survivalROC} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.survivalROC.C} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.prodlim} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.plot} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.sbrier} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.test} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.survfit} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.metaplot} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.meta.colors} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.normOrder} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.summary.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxphCPE} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.phcpe} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rcorr.cens} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.t.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph.object} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one {/usr/local/texlive/2019/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/us r/local/texlive/2019/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/local/texlive /2019/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/local/texlive/20 19/texmf-dist/fonts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/local/t exlive/2019/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/local/te xlive/2019/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/local/tex live/2019/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/local/texlive/20 19/texmf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/local/texlive/2019/texmf-d ist/fonts/type1/urw/times/utmr8a.pfb></usr/local/texlive/2019/texmf-dist/fonts/ type1/urw/times/utmr8a.pfb></usr/local/texlive/2019/texmf-dist/fonts/type1/urw/ times/utmri8a.pfb> Output written on Rd2.pdf (60 pages, 227877 bytes). Transcript written on Rd2.log. This is makeindex, version 2.15 [TeX Live 2019] (kpathsea + Thai support). Scanning input file Rd2.idx....done (191 entries accepted, 0 rejected). Sorting entries.....done (1595 comparisons). Generating output file Rd2.ind....done (231 lines written, 0 warnings). Output written in Rd2.ind. Transcript written in Rd2.ilg. 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[60]) (/private/tmp/RtmpuH88Ms/Rbuilda440709a9fc0/survcomp/.Rd2pdf42048/Rd2.aux ) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.jackknife} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.survivalROC} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.survivalROC.C} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.prodlim} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.plot} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.sbrier} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.test} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.survfit} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.metaplot} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.meta.colors} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.normOrder} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.summary.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxphCPE} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.phcpe} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rcorr.cens} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.t.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph.object} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one {/usr/local/texlive/2019/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/us r/local/texlive/2019/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/local/texlive /2019/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/local/texlive/20 19/texmf-dist/fonts/type1/public/inconsolata/Inconsolata-zi4r.pfb></usr/local/t exlive/2019/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/local/te xlive/2019/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/local/tex live/2019/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/local/texlive/20 19/texmf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/local/texlive/2019/texmf-d ist/fonts/type1/urw/times/utmr8a.pfb></usr/local/texlive/2019/texmf-dist/fonts/ type1/urw/times/utmr8a.pfb></usr/local/texlive/2019/texmf-dist/fonts/type1/urw/ times/utmri8a.pfb> Output written on Rd2.pdf (60 pages, 227882 bytes). Transcript written on Rd2.log. Saving output to ‘/private/tmp/RtmpuH88Ms/Rbuilda440709a9fc0/survcomp/build/survcomp.pdf’ ... Done * creating vignettes ... OK * cleaning src * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * looking to see if a ‘data/datalist’ file should be added * building ‘survcomp_1.42.0.tar.gz’