Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:54 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the supraHex package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1872/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
supraHex 1.30.0 (landing page) Hai Fang
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: supraHex |
Version: 1.30.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings supraHex_1.30.0.tar.gz |
StartedAt: 2021-10-14 11:48:10 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 11:49:12 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 61.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: supraHex.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings supraHex_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/supraHex.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘supraHex/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘supraHex’ version ‘1.30.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘supraHex’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
supraHex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL supraHex ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘supraHex’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (supraHex)
supraHex.Rcheck/supraHex-Ex.timings
name | user | system | elapsed | |
sBMH | 0.055 | 0.004 | 0.059 | |
sCompReorder | 2.184 | 0.032 | 2.217 | |
sDistance | 0.287 | 0.000 | 0.288 | |
sDmat | 0.330 | 0.003 | 0.333 | |
sDmatCluster | 0.416 | 0.000 | 0.416 | |
sDmatMinima | 0.310 | 0.000 | 0.311 | |
sHexDist | 0.007 | 0.000 | 0.008 | |
sHexGrid | 0.001 | 0.000 | 0.002 | |
sHexGridVariant | 0.001 | 0.003 | 0.003 | |
sHexPolygon | 0.103 | 0.000 | 0.102 | |
sInitial | 0.003 | 0.004 | 0.007 | |
sMapOverlay | 0.348 | 0.140 | 0.488 | |
sNeighAny | 0.007 | 0.004 | 0.011 | |
sNeighDirect | 0.004 | 0.004 | 0.008 | |
sPipeline | 0.001 | 0.000 | 0.001 | |
sTopology | 0.034 | 0.000 | 0.035 | |
sTrainBatch | 0.043 | 0.000 | 0.043 | |
sTrainSeq | 0.312 | 0.004 | 0.317 | |
sTrainology | 0.008 | 0.000 | 0.008 | |
sWriteData | 0.545 | 0.039 | 0.580 | |
visColoralpha | 0.003 | 0.001 | 0.003 | |
visColorbar | 0.016 | 0.000 | 0.017 | |
visColormap | 0.003 | 0.000 | 0.003 | |
visCompReorder | 3.205 | 0.067 | 3.275 | |
visDmatCluster | 0.001 | 0.000 | 0.000 | |
visDmatHeatmap | 0.001 | 0.001 | 0.000 | |
visHeatmap | 0.077 | 0.000 | 0.076 | |
visHeatmapAdv | 0.313 | 0.007 | 0.320 | |
visHexAnimate | 0.001 | 0.000 | 0.001 | |
visHexBarplot | 0.753 | 0.016 | 0.768 | |
visHexComp | 0.275 | 0.004 | 0.279 | |
visHexGrid | 0.270 | 0.001 | 0.271 | |
visHexMapping | 1.363 | 0.025 | 1.388 | |
visHexMulComp | 1.044 | 0.020 | 1.063 | |
visHexPattern | 1.704 | 0.008 | 1.712 | |
visKernels | 0.008 | 0.004 | 0.012 | |
visTreeBSclust | 0 | 0 | 0 | |
visTreeBootstrap | 0.001 | 0.000 | 0.001 | |
visVp | 0.009 | 0.004 | 0.014 | |