Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:24 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the staRank package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/staRank.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1853/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
staRank 1.34.0 (landing page) Juliane Siebourg
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: staRank |
Version: 1.34.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:staRank.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings staRank_1.34.0.tar.gz |
StartedAt: 2021-10-15 06:14:43 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 06:18:25 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 222.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: staRank.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:staRank.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings staRank_1.34.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/staRank.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'staRank/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'staRank' version '1.34.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'staRank' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE OPIScore : <anonymous>: no visible global function definition for 'phyper' aggregRank : <anonymous>: no visible global function definition for 'median' mwTest2samp: no visible global function definition for 'pwilcox' mwTest2samp: no visible global function definition for 'pnorm' show,RankSummary: no visible global function definition for 'head' stabilityRanking,cellHTS: no visible global function definition for 'channelNames' stabilityRanking,cellHTS: no visible global function definition for 'sampleNames' stabilityRanking,cellHTS: no visible global function definition for 'featureNames' stabilityRanking,numeric: no visible global function definition for 'avrgRank<-' stabilityRanking,numeric: no visible global function definition for 'cor' summaryStats,list : <anonymous>: no visible global function definition for 'median' summaryStats,list : <anonymous>: no visible global function definition for 't.test' summaryStats,matrix : <anonymous>: no visible global function definition for 'median' summaryStats,matrix : <anonymous>: no visible global function definition for 't.test' Undefined global functions or variables: avrgRank<- channelNames cor featureNames head median phyper pnorm pwilcox sampleNames t.test Consider adding importFrom("stats", "cor", "median", "phyper", "pnorm", "pwilcox", "t.test") importFrom("utils", "head") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/staRank.Rcheck/00check.log' for details.
staRank.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/staRank_1.34.0.tar.gz && rm -rf staRank.buildbin-libdir && mkdir staRank.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=staRank.buildbin-libdir staRank_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL staRank_1.34.0.zip && rm staRank_1.34.0.tar.gz staRank_1.34.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 36 277k 36 101k 0 0 532k 0 --:--:-- --:--:-- --:--:-- 531k 100 277k 100 277k 0 0 1042k 0 --:--:-- --:--:-- --:--:-- 1042k install for i386 * installing *source* package 'staRank' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'staRank' finding HTML links ... done Pi-methods html RankSummary-class html aggregRank html avrgRank-methods html baseRank-methods html dataFormatRSA html getRankmatrix html getSampleScores-methods html getStability html method-methods html mwTest2samp html rankCor-methods html runRSA html salmonellaInfection html salmonellaStability html show-methods html staRank-package html stabRank-methods html stabilityRanking-methods html stableSetSize-methods html summary-methods html summaryStats-methods html uniqueRSARanking html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'staRank' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'staRank' as staRank_1.34.0.zip * DONE (staRank) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'staRank' successfully unpacked and MD5 sums checked
staRank.Rcheck/examples_i386/staRank-Ex.timings
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staRank.Rcheck/examples_x64/staRank-Ex.timings
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