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This page was generated on 2021-10-15 15:06:23 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the sparseMatrixStats package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sparseMatrixStats.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1811/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
sparseMatrixStats 1.4.2 (landing page) Constantin Ahlmann-Eltze
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: sparseMatrixStats |
Version: 1.4.2 |
Command: rm -rf sparseMatrixStats.buildbin-libdir && mkdir sparseMatrixStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sparseMatrixStats.buildbin-libdir sparseMatrixStats_1.4.2.tar.gz |
StartedAt: 2021-10-15 11:55:32 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 11:57:04 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 92.0 seconds |
RetCode: 0 |
Status: OK |
PackageFile: sparseMatrixStats_1.4.2.zip |
PackageFileSize: 1.852 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf sparseMatrixStats.buildbin-libdir && mkdir sparseMatrixStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sparseMatrixStats.buildbin-libdir sparseMatrixStats_1.4.2.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'sparseMatrixStats' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseMatrixView.cpp -o SparseMatrixView.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c methods.cpp -o methods.o In file included from methods.cpp:6: quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = VectorSubsetView<14>]': quantile.h:85:85: required from here quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]': methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]' methods.cpp:510:73: required from here methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = VectorSubsetView<14>; R = VectorSubsetView<13>]': methods.cpp:30:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]' methods.cpp:510:73: required from here methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] In file included from methods.cpp:6: quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = SkipNAVectorSubsetView<14>]': methods.cpp:269:32: required from 'double colMedians::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]' methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colMedians; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]' methods.cpp:277:63: required from here quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c row_methods.cpp -o row_methods.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o sparseMatrixStats.dll tmp.def RcppExports.o SparseMatrixView.o methods.o row_methods.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/sparseMatrixStats.buildbin-libdir/00LOCK-sparseMatrixStats/00new/sparseMatrixStats/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sparseMatrixStats' finding HTML links ... done colAlls-xgCMatrix-method html colAnyNAs-xgCMatrix-method html colAnys-xgCMatrix-method html colAvgsPerRowSet-xgCMatrix-method html colCollapse-xgCMatrix-method html colCounts-xgCMatrix-method html colCummaxs-dgCMatrix-method html colCummins-dgCMatrix-method html colCumprods-xgCMatrix-method html colCumsums-xgCMatrix-method html colDiffs-dgCMatrix-method html colIQRDiffs-dgCMatrix-method html colIQRs-xgCMatrix-method html colLogSumExps-xgCMatrix-method html colMadDiffs-dgCMatrix-method html colMads-dgCMatrix-method html colMaxs-dgCMatrix-method html colMeans2-xgCMatrix-method html colMedians-dgCMatrix-method html colMins-dgCMatrix-method html colOrderStats-dgCMatrix-method html colProds-xgCMatrix-method html colQuantiles-xgCMatrix-method html colRanges-dgCMatrix-method html colRanks-dgCMatrix-method html colSdDiffs-dgCMatrix-method html colSds-xgCMatrix-method html colSums2-xgCMatrix-method html colTabulates-xgCMatrix-method html colVarDiffs-dgCMatrix-method html colVars-xgCMatrix-method html colWeightedMads-dgCMatrix-method html colWeightedMeans-xgCMatrix-method html colWeightedMedians-dgCMatrix-method html colWeightedSds-xgCMatrix-method html colWeightedVars-xgCMatrix-method html xgCMatrix-class html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'sparseMatrixStats' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseMatrixView.cpp -o SparseMatrixView.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c methods.cpp -o methods.o In file included from methods.cpp:6: quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = VectorSubsetView<14>]': quantile.h:85:85: required from here quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]': methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]' methods.cpp:510:73: required from here methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = VectorSubsetView<14>; R = VectorSubsetView<13>]': methods.cpp:30:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]' methods.cpp:510:73: required from here methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] In file included from methods.cpp:6: quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = SkipNAVectorSubsetView<14>]': methods.cpp:269:32: required from 'double colMedians::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]' methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colMedians; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]' methods.cpp:277:63: required from here quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c row_methods.cpp -o row_methods.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o sparseMatrixStats.dll tmp.def RcppExports.o SparseMatrixView.o methods.o row_methods.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/sparseMatrixStats.buildbin-libdir/sparseMatrixStats/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'sparseMatrixStats' as sparseMatrixStats_1.4.2.zip * DONE (sparseMatrixStats)