Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:23 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the skewr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/skewr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1786/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
skewr 1.24.0 (landing page) Ryan Putney
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: skewr |
Version: 1.24.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:skewr.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings skewr_1.24.0.tar.gz |
StartedAt: 2021-10-15 05:50:46 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 05:57:32 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 406.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: skewr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:skewr.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings skewr_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/skewr.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'skewr/DESCRIPTION' ... OK * this is package 'skewr' version '1.24.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'skewr' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE dSN: no visible global function definition for 'dnorm' dSN: no visible global function definition for 'pnorm' panelPlots: no visible global function definition for 'data' panelPlots : finishPlot: no visible global function definition for 'mtext' panelPlots : finishPlot: no visible global function definition for 'par' panelPlots: no visible global function definition for 'par' panelPlots: no visible global function definition for 'density' panelPlots: no visible global function definition for 'axis' panelPlots: no visible global function definition for 'lines' panelPlots: no visible global function definition for 'segments' panelPlots: no visible global function definition for 'mtext' plotComponents: no visible global function definition for 'hist' plotComponents: no visible global function definition for 'lines' plotComponents: no visible global function definition for 'segments' plotComponents: no visible global function definition for 'density' subsetProbes: no visible global function definition for 'data' subsetProbes: no visible binding for global variable 'IlluminaHumanMethylation450kmanifest' subsetProbes: no visible binding for global variable 'Color' Undefined global functions or variables: Color IlluminaHumanMethylation450kmanifest axis data density dnorm hist lines mtext par pnorm segments Consider adding importFrom("graphics", "axis", "hist", "lines", "mtext", "par", "segments") importFrom("stats", "density", "dnorm", "pnorm") importFrom("utils", "data") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed subsetProbes 4.87 0.14 5.02 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/skewr.Rcheck/00check.log' for details.
skewr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/skewr_1.24.0.tar.gz && rm -rf skewr.buildbin-libdir && mkdir skewr.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=skewr.buildbin-libdir skewr_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL skewr_1.24.0.zip && rm skewr_1.24.0.tar.gz skewr_1.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 68669 100 68669 0 0 129k 0 --:--:-- --:--:-- --:--:-- 129k install for i386 * installing *source* package 'skewr' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' ** help *** installing help indices converting help for package 'skewr' finding HTML links ... done getBarcodes html getMethyLumiSet html getSNparams html panelPlots html preprocess html subsetProbes html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' ** testing if installed package can be loaded from final location No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'skewr' ... ** testing if installed package can be loaded No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' * MD5 sums packaged installation of 'skewr' as skewr_1.24.0.zip * DONE (skewr) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'skewr' successfully unpacked and MD5 sums checked
skewr.Rcheck/examples_i386/skewr-Ex.timings
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skewr.Rcheck/examples_x64/skewr-Ex.timings
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