Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:53 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the sights package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sights.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1760/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
sights 1.18.0 (landing page) Elika Garg
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: sights |
Version: 1.18.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:sights.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings sights_1.18.0.tar.gz |
StartedAt: 2021-10-14 11:37:36 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 11:38:54 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 77.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: sights.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:sights.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings sights_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/sights.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘sights/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘sights’ version ‘1.18.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘sights’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
sights.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL sights ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘sights’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sights)
sights.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(sights) > test_check("sights") alpha= 2.527861 beta= 2.054019 alpha= 2.162155 beta= 2.810248 alpha= 2.162155 beta= 2.810248 alpha= 2.162155 beta= 2.810248 [ FAIL 0 | WARN 13 | SKIP 0 | PASS 65 ] > > proc.time() user system elapsed 37.151 0.428 37.584
sights.Rcheck/sights-Ex.timings
name | user | system | elapsed | |
ex_dataMatrix | 0.016 | 0.005 | 0.020 | |
inglese | 0.039 | 0.007 | 0.047 | |
normLoess | 0.176 | 0.004 | 0.179 | |
normMedFil | 0.067 | 0.003 | 0.071 | |
normR | 0.024 | 0.004 | 0.028 | |
normRobZ | 0.003 | 0.000 | 0.002 | |
normSPAWN | 0.033 | 0.000 | 0.033 | |
normSights | 0.002 | 0.000 | 0.003 | |
normZ | 0.002 | 0.000 | 0.002 | |
plot3d | 0.608 | 0.000 | 0.608 | |
plotAutoco | 1.841 | 0.027 | 1.868 | |
plotBox | 0.497 | 0.000 | 0.496 | |
plotHeatmap | 1.036 | 0.004 | 1.040 | |
plotHist | 0.234 | 0.003 | 0.238 | |
plotIGFit | 0.168 | 0.001 | 0.168 | |
plotScatter | 1.868 | 0.060 | 1.928 | |
plotSights | 1.032 | 0.000 | 1.032 | |
statFDR | 0.028 | 0.000 | 0.029 | |
statRVM | 0.010 | 0.004 | 0.014 | |
statSights | 0.014 | 0.000 | 0.014 | |
statT | 0.021 | 0.000 | 0.021 | |