Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:22 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the sevenbridges package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sevenbridges.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1747/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
sevenbridges 1.22.0 (landing page) Soner Koc
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: sevenbridges |
Version: 1.22.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sevenbridges.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings sevenbridges_1.22.0.tar.gz |
StartedAt: 2021-10-15 05:34:34 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 05:41:29 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 415.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: sevenbridges.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sevenbridges.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings sevenbridges_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/sevenbridges.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'sevenbridges/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'sevenbridges' version '1.22.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'sevenbridges' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Flow 46.78 0.02 58.34 Tool-class 18.45 0.01 23.14 link 8.61 0.02 9.69 convert_app 8.50 0.00 9.64 link_what 6.42 0.00 6.42 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Flow 50.43 0.01 56.78 link 12.66 0.00 13.41 link_what 11.81 0.00 13.89 Tool-class 11.77 0.01 14.94 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
sevenbridges.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/sevenbridges_1.22.0.tar.gz && rm -rf sevenbridges.buildbin-libdir && mkdir sevenbridges.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sevenbridges.buildbin-libdir sevenbridges_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL sevenbridges_1.22.0.zip && rm sevenbridges_1.22.0.tar.gz sevenbridges_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 52 1199k 52 632k 0 0 1000k 0 0:00:01 --:--:-- 0:00:01 1001k 100 1199k 100 1199k 0 0 1253k 0 --:--:-- --:--:-- --:--:-- 1253k install for i386 * installing *source* package 'sevenbridges' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sevenbridges' finding HTML links ... done App-class html Auth-class html Binding html CCBList html CWL html CommandInputParameter-class html CommandInputSchema-class html CommandLineBinding-class html CommandLineTool html CommandOutputBinding-class html CommandOutputParameter-class html CommandOutputSchema-class html DSCList html Enum html Expression-class html ExpressionTool-class html FS-class html File-class html Files-class html Flow html Handler-class html Item-class html Metadata html Parameter html Process html ProcessRequirement html Schema html TaskHook html Tool-class html Workflow html WorkflowStep html addIdNum html api html as-methods html batch html cli_list_projects html cli_list_tags html cli_upload html convert_app html cwl-utils html delete-methods html download-methods html get_token html get_uploader html input_output_matrix html link html link_what html project_details html project_members html requirements html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/sevenbridges.buildbin-libdir/00LOCK-sevenbridges/00new/sevenbridges/help/fileDef.html response-methods html sbg_get_env html sbg_set_env html setListClass html set_test_env html sevenbridges-package html shorthand-cwl html status_check html tag-methods html test_tool_bunny html test_tool_cwlrun html test_tool_rabix html upload_complete_all html upload_complete_part html upload_delete html upload_info html upload_info_part html upload_init html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'sevenbridges' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'sevenbridges' as sevenbridges_1.22.0.zip * DONE (sevenbridges) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'sevenbridges' successfully unpacked and MD5 sums checked
sevenbridges.Rcheck/tests_i386/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("sevenbridges") > test_check("sevenbridges") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] > > proc.time() user system elapsed 3.75 0.32 8.48 |
sevenbridges.Rcheck/tests_x64/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("sevenbridges") > test_check("sevenbridges") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] > > proc.time() user system elapsed 3.17 0.28 3.54 |
sevenbridges.Rcheck/examples_i386/sevenbridges-Ex.timings
|
sevenbridges.Rcheck/examples_x64/sevenbridges-Ex.timings
|