Wolfgang Kaisers
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/seqTools |
| git_branch: RELEASE_3_13 |
| git_last_commit: f74d126 |
| git_last_commit_date: 2021-05-19 12:09:43 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:22 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the seqTools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/seqTools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1743/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| seqTools 1.26.0 (landing page) Wolfgang Kaisers
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: seqTools |
| Version: 1.26.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/seqTools_1.26.0.tar.gz && rm -rf seqTools.buildbin-libdir && mkdir seqTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqTools.buildbin-libdir seqTools_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL seqTools_1.26.0.zip && rm seqTools_1.26.0.tar.gz seqTools_1.26.0.zip |
| StartedAt: 2021-10-14 07:10:43 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 07:12:02 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 79.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/seqTools_1.26.0.tar.gz && rm -rf seqTools.buildbin-libdir && mkdir seqTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqTools.buildbin-libdir seqTools_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL seqTools_1.26.0.zip && rm seqTools_1.26.0.tar.gz seqTools_1.26.0.zip
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install for i386
* installing *source* package 'seqTools' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include' -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c seqTools.c -o seqTools.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o seqTools.dll tmp.def seqTools.o -lm -LC:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/seqTools.buildbin-libdir/00LOCK-seqTools/00new/seqTools/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'seqTools'
finding HTML links ... done
Fastqq-class html
ascii2char html
cbDistMatrix html
collectDur html
countDnaKmers html
countFastaKmers html
countGenomeKmers html
countSpliceKmers html
fastqKmerLocs html
fastqKmerSubsetLocs html
fastqq html
gcContentMatrix html
kMerIndex html
meltDownK html
mergeFastqq html
mergedPhred html
phredDist html
phredTable html
plotGCcontent html
plotKmerCount html
plotNucCount html
plotNucFreq html
plotPhredQuant html
propPhred html
revCountDnaKmers html
seqTools-package html
simFastqqRunTimes html
sim_fq html
trimFastq html
writeFai html
writeSimContFastq html
writeSimFastq html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'seqTools' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c seqTools.c -o seqTools.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o seqTools.dll tmp.def seqTools.o -lm -LC:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/seqTools.buildbin-libdir/seqTools/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqTools' as seqTools_1.26.0.zip
* DONE (seqTools)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'seqTools' successfully unpacked and MD5 sums checked