Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:22 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the scTGIF package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scTGIF.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1719/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
scTGIF 1.6.0 (landing page) Koki Tsuyuzaki
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: scTGIF |
Version: 1.6.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scTGIF.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings scTGIF_1.6.0.tar.gz |
StartedAt: 2021-10-15 05:24:44 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 05:31:26 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 402.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: scTGIF.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scTGIF.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings scTGIF_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/scTGIF.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'scTGIF/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'scTGIF' version '1.6.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'scTGIF' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: 'schex:::.make_hexbin_function' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/scTGIF.Rcheck/00check.log' for details.
scTGIF.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/scTGIF_1.6.0.tar.gz && rm -rf scTGIF.buildbin-libdir && mkdir scTGIF.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scTGIF.buildbin-libdir scTGIF_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL scTGIF_1.6.0.zip && rm scTGIF_1.6.0.tar.gz scTGIF_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 19 2472k 19 478k 0 0 987k 0 0:00:02 --:--:-- 0:00:02 986k 97 2472k 97 2412k 0 0 1623k 0 0:00:01 0:00:01 --:--:-- 1623k 100 2472k 100 2472k 0 0 1659k 0 0:00:01 0:00:01 --:--:-- 1659k install for i386 * installing *source* package 'scTGIF' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scTGIF' finding HTML links ... done DistalLungEpithelium html calcTGIF html cellMarkerToGmt html convertRowID html label.DistalLungEpithelium html pca.DistalLungEpithelium html reportTGIF html scTGIF-package html settingTGIF html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'scTGIF' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'scTGIF' as scTGIF_1.6.0.zip * DONE (scTGIF) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'scTGIF' successfully unpacked and MD5 sums checked
scTGIF.Rcheck/tests_i386/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("scTGIF") > > options(testthat.use_colours = FALSE) > > test_file("testthat/test_DistalLungEpithelium.R") == Testing test_DistalLungEpithelium.R ========================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ] Done! > test_file("testthat/test_TGIFFunctions.R") == Testing test_TGIFFunctions.R ================================================ [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ] Done! > test_file("testthat/test_convertRowID.R") == Testing test_convertRowID.R ================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% [ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ] | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% [ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ] | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% [ FAIL 2 | WARN 0 | SKIP 0 | PASS 5 ] [ FAIL 2 | WARN 1 | SKIP 0 | PASS 5 ] [ FAIL 3 | WARN 1 | SKIP 0 | PASS 5 ] [ FAIL 3 | WARN 2 | SKIP 0 | PASS 5 ] [ FAIL 3 | WARN 2 | SKIP 0 | PASS 6 ] [ FAIL 3 | WARN 3 | SKIP 0 | PASS 6 ] [ FAIL 3 | WARN 3 | SKIP 0 | PASS 7 ] | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% [ FAIL 3 | WARN 3 | SKIP 0 | PASS 8 ] | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% [ FAIL 3 | WARN 3 | SKIP 0 | PASS 9 ] [ FAIL 3 | WARN 3 | SKIP 0 | PASS 10 ] [ FAIL 3 | WARN 3 | SKIP 0 | PASS 11 ] [ FAIL 3 | WARN 3 | SKIP 0 | PASS 12 ] | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% [ FAIL 4 | WARN 3 | SKIP 0 | PASS 12 ] | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% [ FAIL 5 | WARN 3 | SKIP 0 | PASS 12 ] [ FAIL 5 | WARN 4 | SKIP 0 | PASS 12 ] [ FAIL 6 | WARN 4 | SKIP 0 | PASS 12 ] [ FAIL 6 | WARN 5 | SKIP 0 | PASS 12 ] [ FAIL 6 | WARN 5 | SKIP 0 | PASS 13 ] [ FAIL 6 | WARN 6 | SKIP 0 | PASS 13 ] [ FAIL 6 | WARN 6 | SKIP 0 | PASS 14 ] -- Failure (test_convertRowID.R:48:1): (code run outside of `test_that()`) ----- identical(rownames(out$output), c("3", "2", "4", "7")) is not TRUE `actual`: FALSE `expected`: TRUE -- Failure (test_convertRowID.R:51:1): (code run outside of `test_that()`) ----- identical(rownames(out$output), c("3", "2", "4", "7")) is not TRUE `actual`: FALSE `expected`: TRUE -- Warning (test_convertRowID.R:53:1): (code run outside of `test_that()`) ----- number of items to replace is not a multiple of replacement length Backtrace: 1. scTGIF::convertRowID(input, rowID, LtoR, "large.mean") test_convertRowID.R:53:0 2. scTGIF:::f(input, rowID, LtoR, score, unique.right) 3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`) 4. igraph:::i_set_edge_attr(...) -- Failure (test_convertRowID.R:54:1): (code run outside of `test_that()`) ----- identical(rownames(out$output), c("3", "2", "4", "7")) is not TRUE `actual`: FALSE `expected`: TRUE -- Warning (test_convertRowID.R:56:1): (code run outside of `test_that()`) ----- number of items to replace is not a multiple of replacement length Backtrace: 1. scTGIF::convertRowID(input, rowID, LtoR, "large.var") test_convertRowID.R:56:0 2. scTGIF:::f(input, rowID, LtoR, score, unique.right) 3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`) 4. igraph:::i_set_edge_attr(...) -- Warning (test_convertRowID.R:59:1): (code run outside of `test_that()`) ----- number of items to replace is not a multiple of replacement length Backtrace: 1. scTGIF::convertRowID(input, rowID, LtoR, "large.cv2") test_convertRowID.R:59:0 2. scTGIF:::f(input, rowID, LtoR, score, unique.right) 3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`) 4. igraph:::i_set_edge_attr(...) -- Failure (test_convertRowID.R:112:1): (code run outside of `test_that()`) ---- identical(rownames(out$output), c("5", "2", "7")) is not TRUE `actual`: FALSE `expected`: TRUE -- Failure (test_convertRowID.R:115:1): (code run outside of `test_that()`) ---- identical(rownames(out$output), c("5", "2", "7")) is not TRUE `actual`: FALSE `expected`: TRUE -- Warning (test_convertRowID.R:117:1): (code run outside of `test_that()`) ---- number of items to replace is not a multiple of replacement length Backtrace: 1. scTGIF::convertRowID(input, rowID, LtoR, "large.mean") test_convertRowID.R:117:0 2. scTGIF:::f(input, rowID, LtoR, score, unique.right) 3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`) 4. igraph:::i_set_edge_attr(...) -- Failure (test_convertRowID.R:118:1): (code run outside of `test_that()`) ---- identical(rownames(out$output), c("5", "2", "7")) is not TRUE `actual`: FALSE `expected`: TRUE -- Warning (test_convertRowID.R:120:1): (code run outside of `test_that()`) ---- number of items to replace is not a multiple of replacement length Backtrace: 1. scTGIF::convertRowID(input, rowID, LtoR, "large.var") test_convertRowID.R:120:0 2. scTGIF:::f(input, rowID, LtoR, score, unique.right) 3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`) 4. igraph:::i_set_edge_attr(...) -- Warning (test_convertRowID.R:123:1): (code run outside of `test_that()`) ---- number of items to replace is not a multiple of replacement length Backtrace: 1. scTGIF::convertRowID(input, rowID, LtoR, "large.cv2") test_convertRowID.R:123:0 2. scTGIF:::f(input, rowID, LtoR, score, unique.right) 3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`) 4. igraph:::i_set_edge_attr(...) [ FAIL 6 | WARN 6 | SKIP 0 | PASS 14 ] > test_file("testthat/test_cellMarkerToGmt.R") == Testing test_cellMarkerToGmt.R ============================================== [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 1 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 2 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 3 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 1 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 2 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 3 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 4 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 5 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 6 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 7 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 8 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 9 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 10 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 11 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 12 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 13 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 14 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 15 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 16 ] -- Warning (test_cellMarkerToGmt.R:134:1): (code run outside of `test_that()`) -- 1 record(s) contain duplicate ids: Meniscus Backtrace: 1. GSEABase::getGmt(outfile2_1) test_cellMarkerToGmt.R:134:0 2. GSEABase:::.warningf(...) -- Warning (test_cellMarkerToGmt.R:135:1): (code run outside of `test_that()`) -- 1 record(s) contain duplicate ids: Meniscus Backtrace: 1. GSEABase::getGmt(outfile2_2) test_cellMarkerToGmt.R:135:0 2. GSEABase:::.warningf(...) -- Warning (test_cellMarkerToGmt.R:140:1): (code run outside of `test_that()`) -- 1 record(s) contain duplicate ids: Pancreas Backtrace: 1. GSEABase::getGmt(outfile3_1) test_cellMarkerToGmt.R:140:0 2. GSEABase:::.warningf(...) -- Warning (test_cellMarkerToGmt.R:141:1): (code run outside of `test_that()`) -- 1 record(s) contain duplicate ids: Pancreas Backtrace: 1. GSEABase::getGmt(outfile3_2) test_cellMarkerToGmt.R:141:0 2. GSEABase:::.warningf(...) [ FAIL 0 | WARN 4 | SKIP 0 | PASS 16 ] > > proc.time() user system elapsed 14.01 1.60 15.62 |
scTGIF.Rcheck/tests_x64/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("scTGIF") > > options(testthat.use_colours = FALSE) > > test_file("testthat/test_DistalLungEpithelium.R") == Testing test_DistalLungEpithelium.R ========================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ] Done! > test_file("testthat/test_TGIFFunctions.R") == Testing test_TGIFFunctions.R ================================================ [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ] Done! > test_file("testthat/test_convertRowID.R") == Testing test_convertRowID.R ================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% [ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ] | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% [ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ] | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% [ FAIL 2 | WARN 0 | SKIP 0 | PASS 5 ] [ FAIL 2 | WARN 1 | SKIP 0 | PASS 5 ] [ FAIL 3 | WARN 1 | SKIP 0 | PASS 5 ] [ FAIL 3 | WARN 2 | SKIP 0 | PASS 5 ] [ FAIL 3 | WARN 2 | SKIP 0 | PASS 6 ] [ FAIL 3 | WARN 3 | SKIP 0 | PASS 6 ] [ FAIL 3 | WARN 3 | SKIP 0 | PASS 7 ] | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% [ FAIL 3 | WARN 3 | SKIP 0 | PASS 8 ] | | | 0% | |======================= | 33% | |=============================================== | 67% | |======================================================================| 100% [ FAIL 3 | WARN 3 | SKIP 0 | PASS 9 ] [ FAIL 3 | WARN 3 | SKIP 0 | PASS 10 ] [ FAIL 3 | WARN 3 | SKIP 0 | PASS 11 ] [ FAIL 3 | WARN 3 | SKIP 0 | PASS 12 ] | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% [ FAIL 4 | WARN 3 | SKIP 0 | PASS 12 ] | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% [ FAIL 5 | WARN 3 | SKIP 0 | PASS 12 ] [ FAIL 5 | WARN 4 | SKIP 0 | PASS 12 ] [ FAIL 6 | WARN 4 | SKIP 0 | PASS 12 ] [ FAIL 6 | WARN 5 | SKIP 0 | PASS 12 ] [ FAIL 6 | WARN 5 | SKIP 0 | PASS 13 ] [ FAIL 6 | WARN 6 | SKIP 0 | PASS 13 ] [ FAIL 6 | WARN 6 | SKIP 0 | PASS 14 ] -- Failure (test_convertRowID.R:48:1): (code run outside of `test_that()`) ----- identical(rownames(out$output), c("3", "2", "4", "7")) is not TRUE `actual`: FALSE `expected`: TRUE -- Failure (test_convertRowID.R:51:1): (code run outside of `test_that()`) ----- identical(rownames(out$output), c("3", "2", "4", "7")) is not TRUE `actual`: FALSE `expected`: TRUE -- Warning (test_convertRowID.R:53:1): (code run outside of `test_that()`) ----- number of items to replace is not a multiple of replacement length Backtrace: 1. scTGIF::convertRowID(input, rowID, LtoR, "large.mean") test_convertRowID.R:53:0 2. scTGIF:::f(input, rowID, LtoR, score, unique.right) 3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`) 4. igraph:::i_set_edge_attr(...) -- Failure (test_convertRowID.R:54:1): (code run outside of `test_that()`) ----- identical(rownames(out$output), c("3", "2", "4", "7")) is not TRUE `actual`: FALSE `expected`: TRUE -- Warning (test_convertRowID.R:56:1): (code run outside of `test_that()`) ----- number of items to replace is not a multiple of replacement length Backtrace: 1. scTGIF::convertRowID(input, rowID, LtoR, "large.var") test_convertRowID.R:56:0 2. scTGIF:::f(input, rowID, LtoR, score, unique.right) 3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`) 4. igraph:::i_set_edge_attr(...) -- Warning (test_convertRowID.R:59:1): (code run outside of `test_that()`) ----- number of items to replace is not a multiple of replacement length Backtrace: 1. scTGIF::convertRowID(input, rowID, LtoR, "large.cv2") test_convertRowID.R:59:0 2. scTGIF:::f(input, rowID, LtoR, score, unique.right) 3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`) 4. igraph:::i_set_edge_attr(...) -- Failure (test_convertRowID.R:112:1): (code run outside of `test_that()`) ---- identical(rownames(out$output), c("5", "2", "7")) is not TRUE `actual`: FALSE `expected`: TRUE -- Failure (test_convertRowID.R:115:1): (code run outside of `test_that()`) ---- identical(rownames(out$output), c("5", "2", "7")) is not TRUE `actual`: FALSE `expected`: TRUE -- Warning (test_convertRowID.R:117:1): (code run outside of `test_that()`) ---- number of items to replace is not a multiple of replacement length Backtrace: 1. scTGIF::convertRowID(input, rowID, LtoR, "large.mean") test_convertRowID.R:117:0 2. scTGIF:::f(input, rowID, LtoR, score, unique.right) 3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`) 4. igraph:::i_set_edge_attr(...) -- Failure (test_convertRowID.R:118:1): (code run outside of `test_that()`) ---- identical(rownames(out$output), c("5", "2", "7")) is not TRUE `actual`: FALSE `expected`: TRUE -- Warning (test_convertRowID.R:120:1): (code run outside of `test_that()`) ---- number of items to replace is not a multiple of replacement length Backtrace: 1. scTGIF::convertRowID(input, rowID, LtoR, "large.var") test_convertRowID.R:120:0 2. scTGIF:::f(input, rowID, LtoR, score, unique.right) 3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`) 4. igraph:::i_set_edge_attr(...) -- Warning (test_convertRowID.R:123:1): (code run outside of `test_that()`) ---- number of items to replace is not a multiple of replacement length Backtrace: 1. scTGIF::convertRowID(input, rowID, LtoR, "large.cv2") test_convertRowID.R:123:0 2. scTGIF:::f(input, rowID, LtoR, score, unique.right) 3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`) 4. igraph:::i_set_edge_attr(...) [ FAIL 6 | WARN 6 | SKIP 0 | PASS 14 ] > test_file("testthat/test_cellMarkerToGmt.R") == Testing test_cellMarkerToGmt.R ============================================== [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 1 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 2 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 3 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 1 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 2 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 3 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 4 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 5 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 6 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 7 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 8 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 9 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 10 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 11 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 12 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 13 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 14 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 15 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 16 ] -- Warning (test_cellMarkerToGmt.R:134:1): (code run outside of `test_that()`) -- 1 record(s) contain duplicate ids: Meniscus Backtrace: 1. GSEABase::getGmt(outfile2_1) test_cellMarkerToGmt.R:134:0 2. GSEABase:::.warningf(...) -- Warning (test_cellMarkerToGmt.R:135:1): (code run outside of `test_that()`) -- 1 record(s) contain duplicate ids: Meniscus Backtrace: 1. GSEABase::getGmt(outfile2_2) test_cellMarkerToGmt.R:135:0 2. GSEABase:::.warningf(...) -- Warning (test_cellMarkerToGmt.R:140:1): (code run outside of `test_that()`) -- 1 record(s) contain duplicate ids: Pancreas Backtrace: 1. GSEABase::getGmt(outfile3_1) test_cellMarkerToGmt.R:140:0 2. GSEABase:::.warningf(...) -- Warning (test_cellMarkerToGmt.R:141:1): (code run outside of `test_that()`) -- 1 record(s) contain duplicate ids: Pancreas Backtrace: 1. GSEABase::getGmt(outfile3_2) test_cellMarkerToGmt.R:141:0 2. GSEABase:::.warningf(...) [ FAIL 0 | WARN 4 | SKIP 0 | PASS 16 ] > > proc.time() user system elapsed 15.46 0.78 16.23 |
scTGIF.Rcheck/examples_i386/scTGIF-Ex.timings
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scTGIF.Rcheck/examples_x64/scTGIF-Ex.timings
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