Back to Multiple platform build/check report for BioC 3.13
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2021-10-15 15:06:21 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for sangeranalyseR on tokay2

To the developers/maintainers of the sangeranalyseR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sangeranalyseR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1668/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sangeranalyseR 1.2.0  (landing page)
Kuan-Hao Chao
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/sangeranalyseR
git_branch: RELEASE_3_13
git_last_commit: 1dc9873
git_last_commit_date: 2021-05-19 12:52:42 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: sangeranalyseR
Version: 1.2.0
Command: rm -rf sangeranalyseR.buildbin-libdir && mkdir sangeranalyseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sangeranalyseR.buildbin-libdir sangeranalyseR_1.2.0.tar.gz
StartedAt: 2021-10-15 11:35:39 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 11:37:10 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 91.7 seconds
RetCode: 0
Status:   OK  
PackageFile: sangeranalyseR_1.2.0.zip
PackageFileSize: 5.503 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf sangeranalyseR.buildbin-libdir && mkdir sangeranalyseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sangeranalyseR.buildbin-libdir sangeranalyseR_1.2.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'sangeranalyseR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to '==' 
** help
*** installing help indices
  converting help for package 'sangeranalyseR'
    finding HTML links ... done
    ChromatogramParam-class                 html  
    MakeBaseCalls-methods                   html  
    QualityReport-class-qualityBasePlot     html  
    QualityReport-class-updateQualityParam
                                            html  
    QualityReport-class                     html  
    SangerAlignment-class-generateReportSA
                                            html  
    SangerAlignment-class-launchAppSA       html  
    SangerAlignment-class-updateQualityParam
                                            html  
    SangerAlignment-class-writeFastaSA      html  
    SangerAlignment-class                   html  
    SangerAlignment                         html  
    SangerContig-class-generateReportSC     html  
    SangerContig-class-launchAppSC          html  
    SangerContig-class-updateQualityParam   html  
    SangerContig-class-writeFastaSC         html  
    SangerContig-class                      html  
    SangerContig                            html  
    SangerRead-class-MakeBaseCalls          html  
    SangerRead-class-generateReportSR       html  
    SangerRead-class-qualityBasePlot        html  
    SangerRead-class-readTable              html  
    SangerRead-class-updateQualityParam     html  
    SangerRead-class-writeFastaSR           html  
    SangerRead-class                        html  
    SangerRead                              html  
    generateReport                          html  
    generateReportSA-methods                html  
    generateReportSC-methods                html  
    generateReportSR-methods                html  
    launchApp                               html  
    launchAppSA-methods                     html  
    launchAppSC-methods                     html  
    qualityBasePlot-methods                 html  
    qualityReportData                       html  
    readTable-methods                       html  
    sangerAlignmentData                     html  
    sangerContigData                        html  
    sangerReadFData                         html  
    sangeranalyseR                          html  
    updateQualityParam-methods              html  
    writeFasta                              html  
    writeFastaSA-methods                    html  
    writeFastaSC-methods                    html  
    writeFastaSR-methods                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sangeranalyseR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sangeranalyseR' as sangeranalyseR_1.2.0.zip
* DONE (sangeranalyseR)