Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:50 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the ropls package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ropls.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1621/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ropls 1.24.0 (landing page) Etienne A. Thevenot
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: ropls |
Version: 1.24.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ropls.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ropls_1.24.0.tar.gz |
StartedAt: 2021-10-14 23:21:26 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 23:22:54 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 87.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ropls.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ropls.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ropls_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/ropls.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ropls/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ropls’ version ‘1.24.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ropls’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘MultiDataSet’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getMset 6.952 0.197 7.153 opls 5.231 0.170 5.426 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.13-bioc/meat/ropls.Rcheck/00check.log’ for details.
ropls.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ropls ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘ropls’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘opls’ with signature ‘x="MultiDataSet"’: no definition for class “MultiDataSet” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ropls)
ropls.Rcheck/ropls-Ex.timings
name | user | system | elapsed | |
checkW4M | 0.180 | 0.020 | 0.202 | |
coef | 0.846 | 0.124 | 0.969 | |
fitted | 1.555 | 0.094 | 1.650 | |
fromW4M | 0.194 | 0.004 | 0.198 | |
getEset | 0.895 | 0.086 | 0.982 | |
getLoadingMN | 0.812 | 0.063 | 0.877 | |
getMset | 6.952 | 0.197 | 7.153 | |
getPcaVarVn | 0.117 | 0.009 | 0.126 | |
getScoreMN | 0.700 | 0.047 | 0.748 | |
getSubsetVi | 0.083 | 0.004 | 0.089 | |
getSummaryDF | 0.771 | 0.042 | 0.813 | |
getVipVn | 0.665 | 0.039 | 0.705 | |
getWeightMN | 0.839 | 0.036 | 0.878 | |
opls-class | 2.955 | 0.165 | 3.124 | |
opls | 5.231 | 0.170 | 5.426 | |
oplsMultiDataSet-class | 0 | 0 | 0 | |
plot | 4.496 | 0.130 | 4.638 | |
predict | 0.085 | 0.004 | 0.090 | |
0.841 | 0.040 | 0.884 | ||
residuals | 0.667 | 0.023 | 0.690 | |
ropls-package | 3.412 | 0.124 | 3.541 | |
show | 0.753 | 0.029 | 0.784 | |
tested | 0.083 | 0.004 | 0.088 | |
toW4M | 0.149 | 0.005 | 0.154 | |
view | 0.637 | 0.059 | 0.702 | |