Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:50 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the ribor package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ribor.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1581/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ribor 1.4.0 (landing page) Michael Geng
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: ribor |
Version: 1.4.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ribor.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ribor_1.4.0.tar.gz |
StartedAt: 2021-10-14 23:11:30 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 23:13:40 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 130.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ribor.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ribor.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ribor_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/ribor.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ribor/DESCRIPTION’ ... OK * this is package ‘ribor’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt .travis.yml These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ribor’ can be installed ... OK * checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: extdata 4.7Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.13-bioc/meat/ribor.Rcheck/00check.log’ for details.
ribor.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ribor ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘ribor’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ribor)
ribor.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ribor) > > test_check("ribor") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 96 ] > > proc.time() user system elapsed 27.224 1.316 28.562
ribor.Rcheck/ribor-Ex.timings
name | user | system | elapsed | |
get_coverage | 0.559 | 0.071 | 0.632 | |
get_experiments | 0.140 | 0.013 | 0.153 | |
get_info | 0.192 | 0.020 | 0.214 | |
get_internal_region_coordinates | 2.491 | 0.074 | 2.592 | |
get_internal_region_lengths | 2.208 | 0.047 | 2.257 | |
get_length_distribution | 0.408 | 0.023 | 0.432 | |
get_metadata | 0.129 | 0.011 | 0.140 | |
get_metagene | 0.491 | 0.033 | 0.523 | |
get_original_region_coordinates | 2.651 | 0.036 | 2.689 | |
get_original_region_lengths | 2.577 | 0.048 | 2.635 | |
get_reference_names | 0.705 | 0.020 | 0.726 | |
get_region_counts | 0.276 | 0.020 | 0.296 | |
get_rnaseq | 0.275 | 0.018 | 0.292 | |
get_tidy_metagene | 0.753 | 0.042 | 0.796 | |
plot_length_distribution | 1.367 | 0.039 | 1.407 | |
plot_metagene | 1.703 | 0.061 | 1.766 | |
plot_region_counts | 1.315 | 0.035 | 1.352 | |
rename_default | 0.000 | 0.001 | 0.000 | |
rename_transcripts | 2.197 | 0.018 | 2.217 | |
ribo-class | 1.817 | 0.035 | 1.852 | |
set_aliases | 1.720 | 0.022 | 1.745 | |