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This page was generated on 2021-10-15 15:06:19 -0400 (Fri, 15 Oct 2021).

INSTALL results for rhdf5 on tokay2

To the developers/maintainers of the rhdf5 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1573/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rhdf5 2.36.0  (landing page)
Mike Smith
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/rhdf5
git_branch: RELEASE_3_13
git_last_commit: 4dc527f
git_last_commit_date: 2021-05-19 11:51:13 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: rhdf5
Version: 2.36.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/rhdf5_2.36.0.tar.gz && rm -rf rhdf5.buildbin-libdir && mkdir rhdf5.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5.buildbin-libdir rhdf5_2.36.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL rhdf5_2.36.0.zip && rm rhdf5_2.36.0.tar.gz rhdf5_2.36.0.zip
StartedAt: 2021-10-14 07:15:33 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 07:18:43 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 190.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/rhdf5_2.36.0.tar.gz && rm -rf rhdf5.buildbin-libdir && mkdir rhdf5.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5.buildbin-libdir rhdf5_2.36.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL rhdf5_2.36.0.zip && rm rhdf5_2.36.0.tar.gz rhdf5_2.36.0.zip
###
##############################################################################
##############################################################################


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install for i386

* installing *source* package 'rhdf5' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5.c -o H5.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5A.c -o H5A.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5D.c -o H5D.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5E.c -o H5E.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5F.c -o H5F.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5G.c -o H5G.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5I.c -o H5I.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5L.c -o H5L.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5O.c -o H5O.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5P.c -o H5P.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5S.c -o H5S.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5S_extras.c -o H5S_extras.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5T.c -o H5T.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5Z.c -o H5Z.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5constants.c -o H5constants.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c HandleList.cpp -o HandleList.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c HandleListWrap.c -o HandleListWrap.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c external_filters.c -o external_filters.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5dump.c -o h5dump.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5ls.c -o h5ls.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5testLock.c -o h5testLock.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5writeDataFrame.c -o h5writeDataFrame.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c printdatatype.c -o printdatatype.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c utils.c -o utils.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"c:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c wrap.c -o wrap.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5S_extras.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/library/Rhdf5lib/lib/i386 -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lszip -lz -lpsapi -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/rhdf5.buildbin-libdir/00LOCK-rhdf5/00new/rhdf5/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rhdf5'
    finding HTML links ... done
    H5                                      html  
    H5A                                     html  
    H5D                                     html  
    H5F                                     html  
    H5G                                     html  
    H5I                                     html  
    H5IdComponent-class                     html  
    H5L                                     html  
    H5O                                     html  
    H5P                                     html  
    H5P_DATASET_ACCESS                      html  
    H5P_DATASET_CREATE                      html  
    H5P_FILE_ACCESS                         html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/rhdf5.buildbin-libdir/00LOCK-rhdf5/00new/rhdf5/help/H5P_DATASET_ACCESS.html
    H5P_LINK_CREATE                         html  
    H5S                                     html  
    H5T                                     html  
    h5closeAll                              html  
    h5const                                 html  
    h5createAttribute                       html  
    h5createDataset                         html  
    h5createFile                            html  
    h5createGroup                           html  
    h5delete                                html  
    h5errorHandling                         html  
    h5fileLocking                           html  
    h5listIdentifier                        html  
    h5ls                                    html  
    h5save                                  html  
    h5set_extent                            html  
    h5version                               html  
    h5write                                 html  
    methods-And                             html  
    methods-Dollar1                         html  
    methods-Dollar2                         html  
    methods-subset1                         html  
    methods-subset2                         html  
    rhdf5                                   html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/rhdf5.buildbin-libdir/00LOCK-rhdf5/00new/rhdf5/help/HDF5.html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'rhdf5' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5.c -o H5.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5A.c -o H5A.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5D.c -o H5D.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5E.c -o H5E.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5F.c -o H5F.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5G.c -o H5G.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5I.c -o H5I.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5L.c -o H5L.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5O.c -o H5O.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5P.c -o H5P.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5S.c -o H5S.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5S_extras.c -o H5S_extras.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5T.c -o H5T.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5Z.c -o H5Z.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5constants.c -o H5constants.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c HandleList.cpp -o HandleList.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c HandleListWrap.c -o HandleListWrap.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c external_filters.c -o external_filters.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5dump.c -o h5dump.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5ls.c -o h5ls.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5testLock.c -o h5testLock.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5writeDataFrame.c -o h5writeDataFrame.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c printdatatype.c -o printdatatype.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c utils.c -o utils.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c wrap.c -o wrap.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5S_extras.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/library/Rhdf5lib/lib/x64 -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lszip -lz -lpsapi -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/rhdf5.buildbin-libdir/rhdf5/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rhdf5' as rhdf5_2.36.0.zip
* DONE (rhdf5)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'rhdf5' successfully unpacked and MD5 sums checked