Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:49 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the randPack package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/randPack.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1500/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
randPack 1.38.0 (landing page) Robert Gentleman
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: randPack |
Version: 1.38.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:randPack.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings randPack_1.38.0.tar.gz |
StartedAt: 2021-10-14 11:13:57 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 11:14:21 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 24.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: randPack.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:randPack.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings randPack_1.38.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/randPack.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘randPack/DESCRIPTION’ ... OK * this is package ‘randPack’ version ‘1.38.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘randPack’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Non-standard license specification: Artistic 2.0 Standardizable: TRUE Standardized license specification: Artistic-2.0 * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘methods’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .checkRand2CT : <anonymous>: no visible global function definition for ‘is’ .newEBC: no visible global function definition for ‘is’ .newPBlock: no visible global function definition for ‘is’ .newUrn: no visible global function definition for ‘is’ addPData: no visible global function definition for ‘is’ createTrial: no visible global function definition for ‘new’ getCovariates : <anonymous> : <anonymous>: no visible binding for global variable ‘slot’ getEnrolleeInfo: no visible global function definition for ‘is’ getTreatment: no visible global function definition for ‘is’ makeRandomizer: no visible global function definition for ‘is’ makeRandomizer: no visible global function definition for ‘new’ trtAlloc: no visible global function definition for ‘is’ validPID: no visible global function definition for ‘is’ show,ClinicalTrial: no visible global function definition for ‘show’ Undefined global functions or variables: is new show slot Consider adding importFrom("methods", "is", "new", "show", "slot") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... NOTE prepare_Rd: getTreatment.Rd:20-21: Dropping empty section \details prepare_Rd: getTreatment.Rd:22-23: Dropping empty section \value prepare_Rd: makeRandomizer.Rd:40-41: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See ‘/home/biocbuild/bbs-3.13-bioc/meat/randPack.Rcheck/00check.log’ for details.
randPack.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL randPack ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘randPack’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (randPack)
randPack.Rcheck/randPack-Ex.timings
name | user | system | elapsed | |
CT1 | 0.010 | 0.004 | 0.015 | |
ClinicalExperiment-class | 0.003 | 0.000 | 0.003 | |
ClinicalTrial-class | 0.000 | 0.002 | 0.002 | |
PatientData-class | 0.000 | 0.000 | 0.001 | |
PatientID-class | 0.002 | 0.001 | 0.003 | |
Randomizer-class | 0.001 | 0.000 | 0.001 | |
SampleData | 0.002 | 0.003 | 0.006 | |
createTrial | 0.003 | 0.000 | 0.003 | |
getEnrolleeInfo | 0.002 | 0.000 | 0.002 | |
getTreatment | 0.005 | 0.000 | 0.005 | |
minimizePocSim | 0.003 | 0.000 | 0.003 | |
simPats | 0.003 | 0.000 | 0.003 | |
treatmentNames | 0.001 | 0.000 | 0.001 | |