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This page was generated on 2021-10-15 15:06:48 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the rama package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rama.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1496/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
rama 1.66.0 (landing page) Raphael Gottardo
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: rama |
Version: 1.66.0 |
Command: rm -rf rama.buildbin-libdir && mkdir rama.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rama_1.66.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R rama.buildbin-libdir |
StartedAt: 2021-10-15 03:37:37 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 03:38:38 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 60.6 seconds |
RetCode: 0 |
Status: OK |
PackageFile: rama_1.66.0.tgz |
PackageFileSize: 589.4 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf rama.buildbin-libdir && mkdir rama.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rama_1.66.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R rama.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=rama.buildbin-libdir rama_1.66.0.tar.gz' >>>>>>> * installing *source* package ‘rama’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c estimation_slice.c -o estimation_slice.o estimation_slice.c:117:10: warning: unused variable 'pi' [-Wunused-variable] double pi=3.14; ^ estimation_slice.c:116:24: warning: unused variable 'SS12' [-Wunused-variable] double SSR1=0,SSR2=0,SS12=0; ^ estimation_slice.c:113:27: warning: unused variable 'lambda_eps2_new' [-Wunused-variable] double lambda_eps1_new, lambda_eps2_new; ^ estimation_slice.c:114:22: warning: unused variable 'l_epsilon_new' [-Wunused-variable] double l_epsilon=0,l_epsilon_new=0; ^ estimation_slice.c:113:10: warning: unused variable 'lambda_eps1_new' [-Wunused-variable] double lambda_eps1_new, lambda_eps2_new; ^ estimation_slice.c:114:10: warning: unused variable 'l_epsilon' [-Wunused-variable] double l_epsilon=0,l_epsilon_new=0; ^ estimation_slice.c:115:10: warning: unused variable 'dens_epsilon' [-Wunused-variable] double dens_epsilon=0,dens_epsilon_new=0; ^ estimation_slice.c:122:10: warning: unused variable 'SSeps_sd_new' [-Wunused-variable] double SSeps_sd_new=0.; ^ estimation_slice.c:115:25: warning: unused variable 'dens_epsilon_new' [-Wunused-variable] double dens_epsilon=0,dens_epsilon_new=0; ^ estimation_slice.c:116:17: warning: unused variable 'SSR2' [-Wunused-variable] double SSR1=0,SSR2=0,SS12=0; ^ estimation_slice.c:116:10: warning: unused variable 'SSR1' [-Wunused-variable] double SSR1=0,SSR2=0,SS12=0; ^ estimation_slice.c:121:10: warning: unused variable 'SSeps_sd' [-Wunused-variable] double SSeps_sd=0.; ^ 12 warnings generated. clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ex_estimation_slice.c -o ex_estimation_slice.o ex_estimation_slice.c:119:19: warning: unused variable 'dens_t_new' [-Wunused-variable] double dens_t=0,dens_t_new=0; ^ ex_estimation_slice.c:138:10: warning: unused variable 'sum_res2' [-Wunused-variable] double sum_res2; ^ ex_estimation_slice.c:119:10: warning: unused variable 'dens_t' [-Wunused-variable] double dens_t=0,dens_t_new=0; ^ ex_estimation_slice.c:137:10: warning: unused variable 'sum_res1' [-Wunused-variable] double sum_res1; ^ ex_estimation_slice.c:143:10: warning: unused variable 'old_b' [-Wunused-variable] double old_b=0,width_b=5.; ^ ex_estimation_slice.c:144:10: warning: unused variable 'old_a' [-Wunused-variable] double old_a=0,width_a=1.; ^ ex_estimation_slice.c:112:10: warning: unused variable 'pi' [-Wunused-variable] double pi=3.14; ^ 7 warnings generated. clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mean.sd.c -o mean.sd.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c reorder.c -o reorder.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c util.c -o util.o util.c:574:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ util.c:629:13: warning: & has lower precedence than >; > will be evaluated first [-Wparentheses] while(K>0 & (z<log_f_L | z<log_f_R)) ~~~~^ util.c:629:13: note: place parentheses around the '>' expression to silence this warning while(K>0 & (z<log_f_L | z<log_f_R)) ^ ( ) util.c:629:13: note: place parentheses around the & expression to evaluate it first while(K>0 & (z<log_f_L | z<log_f_R)) ^ ( ) util.c:613:13: warning: unused variable 'v' [-Wunused-variable] double u, v, L, R, z, a1; ^ util.c:703:13: warning: & has lower precedence than >; > will be evaluated first [-Wparentheses] while(K>0 & (z<log_f_L | z<log_f_R)) ~~~~^ util.c:703:13: note: place parentheses around the '>' expression to silence this warning while(K>0 & (z<log_f_L | z<log_f_R)) ^ ( ) util.c:703:13: note: place parentheses around the & expression to evaluate it first while(K>0 & (z<log_f_L | z<log_f_R)) ^ ( ) util.c:686:13: warning: unused variable 'v' [-Wunused-variable] double u, v, L, R, z, b1; ^ util.c:876:13: warning: & has lower precedence than >; > will be evaluated first [-Wparentheses] while(K>0 & (z<log_f_L | z<log_f_R)) ~~~~^ util.c:876:13: note: place parentheses around the '>' expression to silence this warning while(K>0 & (z<log_f_L | z<log_f_R)) ^ ( ) util.c:876:13: note: place parentheses around the & expression to evaluate it first while(K>0 & (z<log_f_L | z<log_f_R)) ^ ( ) util.c:860:13: warning: unused variable 'v' [-Wunused-variable] double u, v, L, R, z, rho_new; ^ util.c:1019:13: warning: & has lower precedence than >; > will be evaluated first [-Wparentheses] while(K>0 & (z<log_f_L | z<log_f_R)) ~~~~^ util.c:1019:13: note: place parentheses around the '>' expression to silence this warning while(K>0 & (z<log_f_L | z<log_f_R)) ^ ( ) util.c:1019:13: note: place parentheses around the & expression to evaluate it first while(K>0 & (z<log_f_L | z<log_f_R)) ^ ( ) util.c:1000:13: warning: unused variable 'v' [-Wunused-variable] double u, v, L, R, z, shift_new; ^ util.c:1082:13: warning: unused variable 'v' [-Wunused-variable] double u, v, L, R, z, shift_new; ^ 10 warnings generated. clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rama.so estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.13-bioc/meat/rama.buildbin-libdir/00LOCK-rama/00new/rama/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rama) >>>>>>> >>>>>>> FIXING LINKS FOR rama.buildbin-libdir/rama/libs/rama.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "rama.buildbin-libdir/rama/libs/rama.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "rama.buildbin-libdir/rama/libs/rama.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "rama.buildbin-libdir/rama/libs/rama.so"