Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:17 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the qpgraph package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qpgraph.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1473/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
qpgraph 2.26.0 (landing page) Robert Castelo
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: qpgraph |
Version: 2.26.0 |
Command: rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qpgraph.buildbin-libdir qpgraph_2.26.0.tar.gz |
StartedAt: 2021-10-15 11:10:01 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 11:11:32 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 91.0 seconds |
RetCode: 0 |
Status: OK |
PackageFile: qpgraph_2.26.0.zip |
PackageFileSize: 4.243 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qpgraph.buildbin-libdir qpgraph_2.26.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'qpgraph' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cliquer.c -o cliquer.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c qpgraph.c -o qpgraph.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c reorder.c -o reorder.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRblas -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/qpgraph.buildbin-libdir/00LOCK-qpgraph/00new/qpgraph/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph' Creating a generic function for 'det' from package 'Matrix' in package 'qpgraph' ** help *** installing help indices converting help for package 'qpgraph' finding HTML links ... done EcoliOxygen html HMgmm-class html SsdMatrix-class html UGgmm-class html eQTLcross-class html eQTLnetwork-class html eQTLnetworkEstimate html eQTLnetworkEstimationParam-class html filterCollinearities html graphParam-class html qpAllCItests html qpAnyGraph html qpAvgNrr html qpBoundary html qpCItest html qpClique html qpCliqueNumber html qpCov html qpEdgeNrr html qpFunctionalCoherence html qpG2Sigma html qpGenNrr html qpGetCliques html qpGraph-class html qpGraphDensity html qpHTF html qpHist html qpIPF html qpImportNrr html qpK2ParCor html qpNrr html qpPAC html qpPCC html qpPRscoreThreshold html qpPathWeight html qpPlotMap html qpPlotNetwork html qpPrecisionRecall html qpRndGraph html qpRndWishart html qpTopPairs html qpUnifRndAssociation html qpUpdateCliquesRemoving html qpgraph-package html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/qpgraph.buildbin-libdir/00LOCK-qpgraph/00new/qpgraph/help/qpgraph.html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph' ** testing if installed package can be loaded from final location No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'qpgraph' ... ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cliquer.c -o cliquer.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c qpgraph.c -o qpgraph.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c reorder.c -o reorder.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRblas -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/x64 ** testing if installed package can be loaded No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph' * MD5 sums packaged installation of 'qpgraph' as qpgraph_2.26.0.zip * DONE (qpgraph)