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This page was generated on 2021-10-15 15:06:17 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the pulsedSilac package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pulsedSilac.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1459/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| pulsedSilac 1.6.0 (landing page) Marc Pagès-Gallego
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: pulsedSilac |
| Version: 1.6.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pulsedSilac.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings pulsedSilac_1.6.0.tar.gz |
| StartedAt: 2021-10-15 03:52:16 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 03:58:32 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 376.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: pulsedSilac.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pulsedSilac.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings pulsedSilac_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/pulsedSilac.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'pulsedSilac/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'pulsedSilac' version '1.6.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'pulsedSilac' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
pulsedSilac.Rcheck/00install.out
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/pulsedSilac_1.6.0.tar.gz && rm -rf pulsedSilac.buildbin-libdir && mkdir pulsedSilac.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pulsedSilac.buildbin-libdir pulsedSilac_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL pulsedSilac_1.6.0.zip && rm pulsedSilac_1.6.0.tar.gz pulsedSilac_1.6.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 1324k 0 2515 0 0 30804 0 0:00:44 --:--:-- 0:00:44 30670
100 1324k 100 1324k 0 0 1965k 0 --:--:-- --:--:-- --:--:-- 1964k
install for i386
* installing *source* package 'pulsedSilac' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
in method for 'addMisscleavedPeptides' with signature '"SilacProteinExperiment"': no definition for class "SilacProteinExperiment"
in method for 'addMisscleavedPeptides' with signature '"SilacPeptideExperiment"': no definition for class "SilacPeptideExperiment"
in method for 'addMisscleavedPeptides' with signature '"SilacProteomicsExperiment"': no definition for class "SilacProteomicsExperiment"
** help
*** installing help indices
converting help for package 'pulsedSilac'
finding HTML links ... done
SilacPeptideExperiment-class html
finding level-2 HTML links ... done
SilacPeptideExperiment-constructor html
SilacProteinExperiment-class html
SilacProteinExperiment-constructor html
SilacProteinPeptideExperiment-accessors
html
SilacProteomicsExperiment-accessors html
SilacProteomicsExperiment-class html
SilacProteomicsExperiment-constructor html
addMisscleavedPeptides html
barplotCounts html
barplotTimeCoverage html
buildLinkerDf html
calculateAIC html
calculateIsotopeFraction html
calculateIsotopeRatio html
calculateOldIsotopePool html
compareAIC html
filterByMissingTimepoints html
mefPE html
merge html
mergeModelsLists html
modelTurnover html
mostStable html
plotDistributionAssay html
plotDistributionModel html
plotIndividualModel html
recycleLightLysine html
scatterCompareAssays html
scatterCompareModels html
upsetTimeCoverage html
wormsPE html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'pulsedSilac' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pulsedSilac' as pulsedSilac_1.6.0.zip
* DONE (pulsedSilac)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'pulsedSilac' successfully unpacked and MD5 sums checked
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pulsedSilac.Rcheck/tests_i386/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(pulsedSilac)
>
> test_check("pulsedSilac")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1018 ]
>
> proc.time()
user system elapsed
64.03 1.10 65.15
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pulsedSilac.Rcheck/tests_x64/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(pulsedSilac)
>
> test_check("pulsedSilac")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1018 ]
>
> proc.time()
user system elapsed
68.29 0.67 68.98
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pulsedSilac.Rcheck/examples_i386/pulsedSilac-Ex.timings
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pulsedSilac.Rcheck/examples_x64/pulsedSilac-Ex.timings
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