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###
### Running command:
###
###   rm -rf ptairMS.buildbin-libdir && mkdir ptairMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ptairMS.buildbin-libdir ptairMS_1.0.1.tar.gz
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install for i386

* installing *source* package 'ptairMS' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c align.cpp -o align.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c findEqualGreaterM.cpp -o findEqualGreaterM.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ptairMS.dll tmp.def RcppExports.o align.o findEqualGreaterM.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/ptairMS.buildbin-libdir/00LOCK-ptairMS/00new/ptairMS/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'annotateVOC' with signature '"ExpressionSet"': no definition for class "ExpressionSet"
in method for 'writeEset' with signature '"ExpressionSet"': no definition for class "ExpressionSet"
** help
*** installing help indices
  converting help for package 'ptairMS'
    finding HTML links ... done
    LocalMaximaSG                           html  
    OptimalWindowsSG                        html  
    PeakList                                html  
    TransmissionCurve                       html  
    aggregate                               html  
    align                                   html  
    alignSamples                            html  
    annotation                              html  
    calibration                             html  
    calibrationFun                          html  
    changeTimeLimits                        html  
    convert_to_mzML                         html  
    createPtrSet                            html  
    cumulative_fit_function                 html  
    deadTimeCorr                            html  
    defineKnots                             html  
    detectPeak                              html  
    determinePeakShape                      html  
    exportSampleMetada                      html  
    extractEIC                              html  
    fit_averagePeak                         html  
    fit_averagePeak_function                html  
    formula2mass                            html  
    getDirectory                            html  
    getFileNames                            html  
    getPeakList                             html  
    getSampleMetadata                       html  
    importSampleMetadata                    html  
    impute                                  html  
    imputeMat                               html  
    initializeFit                           html  
    makeSubGroup                            html  
    plot                                    html  
    plotCalib                               html  
    plotFeatures                            html  
    plotPeakShape                           html  
    plotRaw                                 html  
    plotTIC                                 html  
    ptairMS-package                         html  
    ptrRaw                                  html  
    ptrSet                                  html  
    readRaw                                 html  
    resetSampleMetadata                     html  
    rmPeakList                              html  
    setSampleMetadata                       html  
    show-ptrRaw-method                      html  
    show-ptrSet-method                      html  
    snipBase                                html  
    timeLimits                              html  
    updatePtrSet                            html  
    width                                   html  
    writeEset                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ptairMS' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c align.cpp -o align.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c findEqualGreaterM.cpp -o findEqualGreaterM.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ptairMS.dll tmp.def RcppExports.o align.o findEqualGreaterM.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/ptairMS.buildbin-libdir/ptairMS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ptairMS' as ptairMS_1.0.1.zip
* DONE (ptairMS)