Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:16 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the plier package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/plier.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1402/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
plier 1.62.0 (landing page) Crispin Miller
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: plier |
Version: 1.62.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/plier_1.62.0.tar.gz && rm -rf plier.buildbin-libdir && mkdir plier.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plier.buildbin-libdir plier_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL plier_1.62.0.zip && rm plier_1.62.0.tar.gz plier_1.62.0.zip |
StartedAt: 2021-10-14 07:51:00 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 07:51:52 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 52.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/plier_1.62.0.tar.gz && rm -rf plier.buildbin-libdir && mkdir plier.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plier.buildbin-libdir plier_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL plier_1.62.0.zip && rm plier_1.62.0.tar.gz plier_1.62.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 21353 100 21353 0 0 180k 0 --:--:-- --:--:-- --:--:-- 181k install for i386 * installing *source* package 'plier' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c affyplier.cpp -o affyplier.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c plier_impl.cpp -o plier_impl.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c plieralg.cpp -o plieralg.o plieralg.cpp: In function 'long int NewtonPlier(plier_data*, double&)': plieralg.cpp:905:14: warning: variable 'icount' set but not used [-Wunused-but-set-variable] long count, icount; ^~~~~~ plieralg.cpp: At global scope: plieralg.cpp:49:12: warning: 'g_ErrorCode' defined but not used [-Wunused-variable] static int g_ErrorCode=NoError; ^~~~~~~~~~~ plieralg.cpp: In function 'long int NewtonPlier(plier_data*, double&)': plieralg.cpp:1257:24: warning: 'LogLikelihood' may be used uninitialized in this function [-Wmaybe-uninitialized] output = LogLikelihood/nSize; ~~~~~~~~~~~~~^~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rwrapper.cpp -o rwrapper.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o plier.dll tmp.def affyplier.o plier_impl.o plieralg.o rwrapper.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/plier.buildbin-libdir/00LOCK-plier/00new/plier/libs/i386 ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'plier' finding HTML links ... done justPlier html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'plier' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c affyplier.cpp -o affyplier.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c plier_impl.cpp -o plier_impl.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c plieralg.cpp -o plieralg.o plieralg.cpp: In function 'long int NewtonPlier(plier_data*, double&)': plieralg.cpp:905:14: warning: variable 'icount' set but not used [-Wunused-but-set-variable] long count, icount; ^~~~~~ plieralg.cpp: At global scope: plieralg.cpp:49:12: warning: 'g_ErrorCode' defined but not used [-Wunused-variable] static int g_ErrorCode=NoError; ^~~~~~~~~~~ plieralg.cpp: In function 'long int NewtonPlier(plier_data*, double&)': plieralg.cpp:1257:24: warning: 'LogLikelihood' may be used uninitialized in this function [-Wmaybe-uninitialized] output = LogLikelihood/nSize; ~~~~~~~~~~~~~^~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rwrapper.cpp -o rwrapper.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o plier.dll tmp.def affyplier.o plier_impl.o plieralg.o rwrapper.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/plier.buildbin-libdir/plier/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'plier' as plier_1.62.0.zip * DONE (plier) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'plier' successfully unpacked and MD5 sums checked