Paul J. McMurdie
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/phyloseq |
| git_branch: RELEASE_3_13 |
| git_last_commit: f9af643 |
| git_last_commit_date: 2021-05-19 11:51:21 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:16 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the phyloseq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/phyloseq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1389/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| phyloseq 1.36.0 (landing page) Paul J. McMurdie
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: phyloseq |
| Version: 1.36.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/phyloseq_1.36.0.tar.gz && rm -rf phyloseq.buildbin-libdir && mkdir phyloseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phyloseq.buildbin-libdir phyloseq_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL phyloseq_1.36.0.zip && rm phyloseq_1.36.0.tar.gz phyloseq_1.36.0.zip |
| StartedAt: 2021-10-14 08:26:45 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 08:28:14 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 89.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/phyloseq_1.36.0.tar.gz && rm -rf phyloseq.buildbin-libdir && mkdir phyloseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phyloseq.buildbin-libdir phyloseq_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL phyloseq_1.36.0.zip && rm phyloseq_1.36.0.tar.gz phyloseq_1.36.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
26 1743k 26 457k 0 0 581k 0 0:00:02 --:--:-- 0:00:02 582k
100 1743k 100 1743k 0 0 1010k 0 0:00:01 0:00:01 --:--:-- 1011k
install for i386
* installing *source* package 'phyloseq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'phyloseq'
finding HTML links ... done
DPCoA html
JSD html
UniFrac-methods html
finding level-2 HTML links ... done
access html
assign-otu_table html
assign-phy_tree html
assign-sample_data html
assign-sample_names html
assign-tax_table html
assign-taxa_are_rows html
assign-taxa_names html
build_tax_table html
capscale-phyloseq-methods html
cca-rda-phyloseq-methods html
chunkReOrder html
data-GlobalPatterns html
data-enterotype html
data-esophagus html
data-soilrep html
decorana html
dist-class html
distance html
distanceMethodList html
envHash2otu_table html
estimate_richness html
export_env_file html
export_mothur_dist html
extract-methods html
filter_taxa html
filterfun_sample html
fix_phylo html
gapstat_ord html
genefilter_sample-methods html
get.component.classes html
get_sample-methods html
get_taxa-methods html
get_taxa_unique html
get_variable html
getslots.phyloseq html
import html
import_RDP_cluster html
import_RDP_otu html
import_biom html
import_env_file html
import_mothur html
import_mothur_constaxonomy html
import_mothur_dist html
import_mothur_groups html
import_mothur_otu_table html
import_mothur_otulist html
import_mothur_shared html
import_pyrotagger_tab html
import_qiime html
import_qiime_otu_tax html
import_qiime_sample_data html
import_uparse html
import_usearch_uc html
index_reorder html
intersect_taxa html
make_network html
merge_phyloseq html
merge_phyloseq_pair-methods html
merge_samples-methods html
merge_taxa-methods html
metaMDS html
microbio_me_qiime html
mt-methods html
nodeplotblank html
nodeplotboot html
nodeplotdefault html
nsamples-methods html
ntaxa-methods html
ordinate html
otu_table-class html
otu_table-methods html
parseTaxonomy-functions html
pcoa html
phy_tree-methods html
phylo-class html
phylo html
phyloseq-class html
phyloseq-deprecated html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/phyloseq.buildbin-libdir/00LOCK-phyloseq/00new/phyloseq/help/taxTab.html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/phyloseq.buildbin-libdir/00LOCK-phyloseq/00new/phyloseq/help/speciesAreRows.html
phyloseq-package html
phyloseq html
phyloseq_to_deseq2 html
phyloseq_to_metagenomeSeq html
plot_bar html
plot_clusgap html
plot_heatmap html
plot_net html
plot_network html
plot_ordination html
plot_phyloseq-methods html
plot_richness html
plot_scree html
plot_tree html
prune_samples-methods html
prune_taxa-methods html
psmelt html
rank_names html
rarefy_even_depth html
read_tree html
read_tree_greengenes html
reconcile_categories html
refseq-methods html
rm_outlierf html
sample_data-class html
sample_data-methods html
sample_names-methods html
sample_sums html
sample_variables html
show-methods html
show_mothur_cutoffs html
splat.phyloseq.objects html
subset_ord_plot html
subset_samples-methods html
subset_taxa-methods html
tax_glom html
tax_table-methods html
taxa_are_rows-methods html
taxa_names-methods html
taxa_sums html
taxonomyTable-class html
threshrank html
threshrankfun html
tip_glom html
topf html
topk html
topp html
transformcounts html
transpose-methods html
tree_layout html
** building package indices
** installing vignettes
'phyloseq-FAQ.Rmd' using 'UTF-8'
'phyloseq-analysis.Rmd'
'phyloseq-basics.Rmd'
'phyloseq-mixture-models.Rmd'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'phyloseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'phyloseq' as phyloseq_1.36.0.zip
* DONE (phyloseq)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'phyloseq' successfully unpacked and MD5 sums checked