Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:14 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the ngsReports package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ngsReports.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1272/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ngsReports 1.8.1 (landing page) Steve Pederson
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: ngsReports |
Version: 1.8.1 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ngsReports_1.8.1.tar.gz && rm -rf ngsReports.buildbin-libdir && mkdir ngsReports.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ngsReports.buildbin-libdir ngsReports_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ngsReports_1.8.1.zip && rm ngsReports_1.8.1.tar.gz ngsReports_1.8.1.zip |
StartedAt: 2021-10-14 09:56:24 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 09:57:42 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 78.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ngsReports_1.8.1.tar.gz && rm -rf ngsReports.buildbin-libdir && mkdir ngsReports.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ngsReports.buildbin-libdir ngsReports_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ngsReports_1.8.1.zip && rm ngsReports_1.8.1.tar.gz ngsReports_1.8.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 657k 0 2487 0 0 30216 0 0:00:22 --:--:-- 0:00:22 30329 100 657k 100 657k 0 0 1338k 0 --:--:-- --:--:-- --:--:-- 1338k install for i386 * installing *source* package 'ngsReports' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ngsReports' finding HTML links ... done FastqcData html FastqcDataList html PwfCols-class html TheoreticalGC-class html dot-FastqcFile-class html dot-addPercent html dot-emptyPlot html dot-getToolName html dot-hidePWFRects html dot-isValidAdapterRemovalLog html dot-isValidBowtieLog html dot-isValidBuscoLog html dot-isValidCutadaptLog html dot-isValidDuplicationMetricsLog html dot-isValidFeatureCountsLog html dot-isValidFlagstatLog html dot-isValidHisat2Log html dot-isValidMacs2CallpeakLog html dot-isValidQuastLog html dot-isValidStarLog html dot-isValidTrimmomaticLog html dot-makeDendro html dot-makeLabels html dot-makeSidebar html dot-parseAdapterRemovalLogs html dot-parseBowtieLogs html dot-parseBuscoLogs html dot-parseCutadaptLogs html dot-parseDuplicationMetricsLogs html dot-parseFeatureCountsLogs html dot-parseFlagstatLogs html dot-parseHisat2Logs html dot-parseMacs2CallpeakLogs html dot-parseQuastLogs html dot-parseStarLogs html dot-parseTrimmomaticLogs html dot-renderDendro html dot-scale_fill_pwf html dot-splitByTab html estGcDistn html extract-methods html fqName-methods html fqcVersion html gcAvail html gcTheoretical html getColours-methods html getGC html getModule html getSummary html importNgsLogs html importSJ html isCompressed html mData html maxAdapterContent html overRep2Fasta-methods html path html plotAdapterContent-methods html plotAlignmentSummary html plotAssemblyStats html plotBaseQuals-methods html plotDupLevels-methods html plotFastqcPCA-methods html plotGcContent-methods html plotKmers-methods html plotNContent-methods html plotOverrep-methods html plotReadTotals-methods html plotSeqContent-methods html plotSeqLengthDistn-methods html plotSeqQuals-methods html plotSummary-methods html pwf html readTotals html runFastQC-methods html writeHtmlReport html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ngsReports' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ngsReports' as ngsReports_1.8.1.zip * DONE (ngsReports) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'ngsReports' successfully unpacked and MD5 sums checked