Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:14 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the nethet package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nethet.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1264/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
nethet 1.24.0 (landing page) Nicolas Staedler
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: nethet |
Version: 1.24.0 |
Command: rm -rf nethet.buildbin-libdir && mkdir nethet.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nethet.buildbin-libdir nethet_1.24.0.tar.gz |
StartedAt: 2021-10-15 10:41:34 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 10:42:50 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 76.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: nethet_1.24.0.zip |
PackageFileSize: 1.151 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf nethet.buildbin-libdir && mkdir nethet.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nethet.buildbin-libdir nethet_1.24.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'nethet' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c betamat_diffnet.c -o betamat_diffnet.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o nethet.dll tmp.def betamat_diffnet.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/nethet.buildbin-libdir/00LOCK-nethet/00new/nethet/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet' Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet' ** help *** installing help indices converting help for package 'nethet' finding HTML links ... done EXPStep.mix html MStepGlasso html NetHet-package html agg.pval html agg.score.iriz.scale html agg.score.iriz.shift html aggpval html aic.glasso html beta.mat html beta.mat.diffregr html bic.glasso html buildDotPlotDataFrame html bwprun_mixglasso html cv.fold html cv.glasso html diffnet_multisplit html diffnet_pval html diffnet_singlesplit html diffregr_multisplit html diffregr_pval html diffregr_singlesplit html dot_plot html error.bars html est2.my.ev2 html est2.my.ev2.diffregr html est2.my.ev3 html est2.my.ev3.diffregr html est2.ww.mat.diffregr html est2.ww.mat2 html est2.ww.mat2.diffregr html export_network html func.uinit html generate_2networks html generate_inv_cov html getinvcov html ggmgsa_multisplit html ggmgsa_singlesplit html glasso.invcor html glasso.invcov html glasso.parcor html gsea.highdimT2 html gsea.iriz html gsea.iriz.scale html gsea.iriz.shift html gsea.t2cov html het_cv_glasso html hugepath html inf.mat html invcov2parcor html invcov2parcor_array html lambda.max html lambdagrid_lin html lambdagrid_mult html loglik_mix html logratio html logratio.diffregr html make_grid html mcov html mixglasso html mixglasso_init html mixglasso_ncomp_fixed html mle.ggm html my.ev2.diffregr html my.p.adjust html my.ttest html my.ttest2 html mytrunc.method html perm.diffregr_pval html perm.diffregr_teststat html plot.diffnet html plot.diffregr html plot.ggmgsa html plot.nethetclustering html plotCV html plot_2networks html print.nethetsummary html q.matrix.diffregr html q.matrix.diffregr3 html q.matrix.diffregr4 html q.matrix3 html q.matrix4 html scatter_plot html screen_aic.glasso html screen_bic.glasso html screen_cv.glasso html screen_cv1se.lasso html screen_cvfix.lasso html screen_cvmin.lasso html screen_cvsqrt.lasso html screen_cvtrunc.lasso html screen_full html screen_shrink html shapiro_screen html sim_mix html sim_mix_networks html sparse_conc html summary.diffnet html summary.diffregr html summary.ggmgsa html summary.nethetclustering html sumoffdiag html symmkldist html t2cov.lr html t2diagcov.lr html test.sd html test.t2 html tr html twosample_single_regr html w.kldist html ww.mat html ww.mat.diffregr html ww.mat2 html ww.mat2.diffregr html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet' Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet' ** testing if installed package can be loaded from final location Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet' Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'nethet' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c betamat_diffnet.c -o betamat_diffnet.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o nethet.dll tmp.def betamat_diffnet.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/nethet.buildbin-libdir/nethet/libs/x64 ** testing if installed package can be loaded Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet' Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet' * MD5 sums packaged installation of 'nethet' as nethet_1.24.0.zip * DONE (nethet)