Aaron Chevalier
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/musicatk |
| git_branch: RELEASE_3_13 |
| git_last_commit: c207280 |
| git_last_commit_date: 2021-05-19 12:57:08 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:13 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the musicatk package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/musicatk.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1235/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| musicatk 1.2.0 (landing page) Aaron Chevalier
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: musicatk |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/musicatk_1.2.0.tar.gz && rm -rf musicatk.buildbin-libdir && mkdir musicatk.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=musicatk.buildbin-libdir musicatk_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL musicatk_1.2.0.zip && rm musicatk_1.2.0.tar.gz musicatk_1.2.0.zip |
| StartedAt: 2021-10-14 11:18:50 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:20:28 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 98.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/musicatk_1.2.0.tar.gz && rm -rf musicatk.buildbin-libdir && mkdir musicatk.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=musicatk.buildbin-libdir musicatk_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL musicatk_1.2.0.zip && rm musicatk_1.2.0.tar.gz musicatk_1.2.0.zip
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100 590k 100 590k 0 0 1193k 0 --:--:-- --:--:-- --:--:-- 1192k
install for i386
* installing *source* package 'musicatk' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'musicatk'
finding HTML links ... done
add_flank_to_variants html
finding level-2 HTML links ... done
add_variant_type html
annotate_replication_strand html
annotate_transcript_strand html
annotate_variant_length html
annotate_variant_type html
auto_predict_grid html
auto_subset_sigs html
build_custom_table html
build_standard_table html
built_tables html
cluster_exposure html
combine_count_tables html
combine_predict_grid html
compare_cosmic_v2 html
compare_cosmic_v3 html
compare_results html
cosmic_v2_sigs html
cosmic_v2_subtype_map html
cosmic_v3_dbs_sigs html
cosmic_v3_indel_sigs html
cosmic_v3_sbs_sigs html
cosmic_v3_sbs_sigs_exome html
count_table-class html
create_dbs78_table html
create_musica html
create_sbs192_table html
create_sbs96_table html
create_umap html
dbs_musica html
discover_signatures html
dot-jsd html
drop_annotation html
exposure_differential_analysis html
exposures html
extract_count_tables html
extract_variants html
extract_variants_from_maf html
extract_variants_from_maf_file html
extract_variants_from_matrix html
extract_variants_from_vcf html
extract_variants_from_vcf_file html
generate_result_grid html
get_musica html
indel_musica html
k_select html
musica-class html
musica html
musica_annot html
musica_result-class html
musica_result_grid-class html
musica_sbs96 html
musica_sbs96_tiny html
name_signatures html
pipe html
plot_cluster html
plot_differential_analysis html
plot_exposures html
plot_heatmap html
plot_sample_counts html
plot_sample_reconstruction_error html
plot_signatures html
plot_umap html
predict_exposure html
rc html
rep_range html
res html
res_annot html
samp_annot html
sample_names html
select_genome html
signatures html
subset_musica_by_annotation html
subset_musica_by_counts html
subset_variant_by_type html
subset_variants_by_samples html
table_96 html
table_selected html
tables html
umap html
variants html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'musicatk' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'musicatk' as musicatk_1.2.0.zip
* DONE (musicatk)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'musicatk' successfully unpacked and MD5 sums checked