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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:multiscan.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings multiscan_1.52.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/multiscan.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'multiscan/DESCRIPTION' ... OK
* this is package 'multiscan' version '1.52.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'multiscan' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'multiscan/R/zzz.R':
  .onAttach calls:
    cat(paste("*** Loaded multiscan Version", packageDescription("multiscan")$Version),     "*** \n")
    cat("Type 'vignette(\"multiscan\")' to view the package vignette.\n")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.

multiscan: no visible global function definition for 'na.omit'
multiscan: no visible global function definition for 'na.fail'
multiscan: no visible binding for global variable 'median'
plot.multiscan: no visible global function definition for 'par'
plot.multiscan: no visible global function definition for 'points'
plot.multiscan: no visible global function definition for 'lines'
plot.multiscan: no visible global function definition for 'legend'
plot.multiscan: no visible global function definition for
  'dev.interactive'
plot.multiscan: no visible global function definition for 'abline'
Undefined global functions or variables:
  abline dev.interactive legend lines median na.fail na.omit par points
Consider adding
  importFrom("grDevices", "dev.interactive")
  importFrom("graphics", "abline", "legend", "lines", "par", "points")
  importFrom("stats", "median", "na.fail", "na.omit")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.13-bioc/R/library/multiscan/libs/i386/multiscan.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'C:/Users/biocbuild/bbs-3.13-bioc/R/library/multiscan/libs/x64/multiscan.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
multiscan 5.36      0    5.36
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
multiscan 5.06   0.01    5.08
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/multiscan.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/multiscan_1.52.0.tar.gz && rm -rf multiscan.buildbin-libdir && mkdir multiscan.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=multiscan.buildbin-libdir multiscan_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL multiscan_1.52.0.zip && rm multiscan_1.52.0.tar.gz multiscan_1.52.0.zip
###
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100 34323  100 34323    0     0   286k      0 --:--:-- --:--:-- --:--:--  288k

install for i386

* installing *source* package 'multiscan' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c multiscan.c -o multiscan.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o multiscan.dll tmp.def multiscan.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/multiscan.buildbin-libdir/00LOCK-multiscan/00new/multiscan/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'multiscan'
    finding HTML links ... done
    multiscan                               html  
    murine                                  html  
    plot.multiscan                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
*** Loaded multiscan Version 1.52.0 *** 
Type 'vignette("multiscan")' to view the package vignette.
** testing if installed package can be loaded from final location
*** Loaded multiscan Version 1.52.0 *** 
Type 'vignette("multiscan")' to view the package vignette.
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'multiscan' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c multiscan.c -o multiscan.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o multiscan.dll tmp.def multiscan.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/multiscan.buildbin-libdir/multiscan/libs/x64
** testing if installed package can be loaded
*** Loaded multiscan Version 1.52.0 *** 
Type 'vignette("multiscan")' to view the package vignette.
* MD5 sums
packaged installation of 'multiscan' as multiscan_1.52.0.zip
* DONE (multiscan)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'multiscan' successfully unpacked and MD5 sums checked