Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:43 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the mogsa package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mogsa.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1175/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mogsa 1.26.0 (landing page) Chen Meng
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: mogsa |
Version: 1.26.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:mogsa.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings mogsa_1.26.0.tar.gz |
StartedAt: 2021-10-14 21:20:31 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 21:23:50 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 198.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: mogsa.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:mogsa.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings mogsa_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/mogsa.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘mogsa/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mogsa’ version ‘1.26.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mogsa’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.13-bioc/meat/mogsa.Rcheck/00check.log’ for details.
mogsa.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL mogsa ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘mogsa’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mogsa)
mogsa.Rcheck/mogsa-Ex.timings
name | user | system | elapsed | |
GIS | 0.300 | 0.019 | 0.320 | |
annotate.gs | 0.610 | 0.021 | 0.631 | |
bootMbpca | 0 | 0 | 0 | |
bootMoa | 0.000 | 0.000 | 0.001 | |
box.gs.feature | 0.308 | 0.016 | 0.324 | |
combine-methods | 0.290 | 0.017 | 0.307 | |
decompose.gs.group | 0.173 | 0.012 | 0.185 | |
decompose.gs.ind | 0.130 | 0.009 | 0.139 | |
distMoa | 0.334 | 0.018 | 0.353 | |
getmgsa | 0.174 | 0.008 | 0.182 | |
matpower | 0.000 | 0.000 | 0.001 | |
mbpca | 4.113 | 0.121 | 4.239 | |
mgsa-class | 0.310 | 0.009 | 0.318 | |
moGap | 2.941 | 0.058 | 3.004 | |
moa-class | 0.118 | 0.006 | 0.125 | |
moa | 0.768 | 0.053 | 0.827 | |
moa.sup-class | 0.112 | 0.006 | 0.118 | |
moaCoef | 0.353 | 0.015 | 0.367 | |
moaScore | 0.400 | 0.005 | 0.404 | |
mogsa-package | 0.339 | 0.012 | 0.351 | |
mogsa | 0.370 | 0.020 | 0.389 | |
pairwise.rv | 0.011 | 0.001 | 0.012 | |
plotGS | 0.180 | 0.008 | 0.189 | |
prepGraphite | 0.540 | 0.004 | 0.543 | |
prepMsigDB | 0.003 | 0.001 | 0.004 | |
prepSupMoa | 3.840 | 0.058 | 3.908 | |
softK | 0.000 | 0.001 | 0.000 | |
sup.moa | 0.523 | 0.009 | 0.533 | |
wsvd | 0.001 | 0.001 | 0.001 | |