Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:45 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the missMethyl package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/missMethyl.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1157/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
missMethyl 1.26.1 (landing page) Belinda Phipson
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: missMethyl |
Version: 1.26.1 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:missMethyl.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings missMethyl_1.26.1.tar.gz |
StartedAt: 2021-10-14 10:38:21 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 11:01:43 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 1401.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: missMethyl.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:missMethyl.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings missMethyl_1.26.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/missMethyl.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘missMethyl/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘missMethyl’ version ‘1.26.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘missMethyl’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE goregion: no visible global function definition for ‘seqlevelsStyle<-’ Undefined global functions or variables: seqlevelsStyle<- * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed RUVadj 61.425 5.820 96.685 RUVfit 35.688 3.242 42.937 topRUV 28.011 0.314 28.327 SWAN 24.042 1.564 25.635 getAdj 22.531 0.261 22.794 topGSA 22.489 0.220 22.717 densityByProbeType 11.939 0.085 12.025 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.13-bioc/meat/missMethyl.Rcheck/00check.log’ for details.
missMethyl.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL missMethyl ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘missMethyl’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (missMethyl)
missMethyl.Rcheck/missMethyl-Ex.timings
name | user | system | elapsed | |
RUVadj | 61.425 | 5.820 | 96.685 | |
RUVfit | 35.688 | 3.242 | 42.937 | |
SWAN | 24.042 | 1.564 | 25.635 | |
contrasts.varFit | 0.047 | 0.004 | 0.052 | |
densityByProbeType | 11.939 | 0.085 | 12.025 | |
getAdj | 22.531 | 0.261 | 22.794 | |
getINCs | 0.280 | 0.000 | 0.281 | |
getLeveneResiduals | 0.008 | 0.000 | 0.008 | |
getMappedEntrezIDs | 0 | 0 | 0 | |
gometh | 0.001 | 0.000 | 0.001 | |
goregion | 0.000 | 0.002 | 0.002 | |
gsameth | 0.000 | 0.001 | 0.001 | |
gsaregion | 0.001 | 0.000 | 0.001 | |
gsaseq | 0.000 | 0.001 | 0.001 | |
topGSA | 22.489 | 0.220 | 22.717 | |
topRUV | 28.011 | 0.314 | 28.327 | |
topVar | 0.01 | 0.00 | 0.01 | |
varFit | 0.009 | 0.000 | 0.010 | |