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This page was generated on 2021-10-15 15:05:45 -0400 (Fri, 15 Oct 2021).

INSTALL results for metahdep on nebbiolo1

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raw results

Package 1088/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metahdep 1.50.0  (landing page)
John R. Stevens
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/metahdep
git_branch: RELEASE_3_13
git_last_commit: 49da854
git_last_commit_date: 2021-05-19 11:42:42 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: metahdep
Version: 1.50.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL metahdep
StartedAt: 2021-10-14 06:05:48 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 06:05:59 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 11.8 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL metahdep
###
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* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘metahdep’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function ‘get_row_indices2’:
/home/biocbuild/bbs-3.13-bioc/R/include/Rinternals.h:620:18: warning: passing argument 5 of ‘metan_binary_search_unique’ makes integer from pointer without a cast [-Wint-conversion]
  620 | #define CHAR(x)  R_CHAR(x)
      |                  ^~~~~~~~~
      |                  |
      |                  const char *
metahdep.c:471:79: note: in expansion of macro ‘CHAR’
  471 |     index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
      |                                                                               ^~~~
metahdep.c:372:103: note: expected ‘char’ but argument is of type ‘const char *’
  372 | SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
      |                                                                                                  ~~~~~^~~~~~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o metahdep.so metahdep.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-metahdep/00new/metahdep/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (metahdep)