Multiple platform build/check report for BioC 3.13 - INSTALL results for martini on tokay2

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### Running command:
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###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/martini_1.12.0.tar.gz && rm -rf martini.buildbin-libdir && mkdir martini.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=martini.buildbin-libdir martini_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL martini_1.12.0.zip && rm martini_1.12.0.tar.gz martini_1.12.0.zip
###
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100 2777k  100 2777k    0     0  2384k      0  0:00:01  0:00:01 --:--:-- 2384k

install for i386

* installing *source* package 'martini' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include'   -I"c:/extsoft/include"  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:377,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8:   required from 'struct Eigen::internal::traits<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<int, 1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<int, 1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34:   required from 'class Eigen::RefBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:193:76:   required from 'class Eigen::Ref<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:694:17:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
../inst/include/martini_RcppExports.h:38:96:   recursively required by substitution of 'template<class T> SEXPREC* Rcpp::wrap(const Eigen::CholmodDecomposition<Eigen::SparseMatrix<Scalar> >&) [with T = <missing>]'
../inst/include/martini_RcppExports.h:38:96:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
../inst/include/martini_RcppExports.h:38:96:   recursively required by substitution of 'template<class T> SEXPREC* Rcpp::wrap(const Eigen::CholmodDecomposition<Eigen::SparseMatrix<Scalar> >&) [with T = <missing>]'
../inst/include/martini_RcppExports.h:38:96:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80:   required from 'struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8:   required from 'struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20:   required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28:   required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Sparse2Sparse>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<typename DstXprType::Scalar, typename SrcXprType::Scalar>&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>; Functor = Eigen::internal::assign_op<double, double>; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>; Func = Eigen::internal::assign_op<double, double>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27:   required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37:   required from 'Derived& Eigen::SparseMatrixBase<Derived>::operator=(const Derived&) [with Derived = Eigen::SparseMatrix<double, 0, int>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]'
RcppExports.cpp:57:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39:   required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38:   required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
../inst/include/martini_RcppExports.h:38:66:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = int]':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from 'static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::internal::redux_evaluator<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:119:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39:   required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38:   required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
../inst/include/martini_RcppExports.h:38:66:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include'   -I"c:/extsoft/include"  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mincut.cpp -o mincut.o
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:377,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8:   required from 'struct Eigen::internal::traits<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<int, 1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<int, 1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34:   required from 'class Eigen::RefBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:193:76:   required from 'class Eigen::Ref<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:694:17:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, -1, 1>'
mincut.cpp:41:12:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, -1, 1>'
mincut.cpp:41:12:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/EigenBase.h:41:59:   required from 'struct Eigen::EigenBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:26:34:   required from 'class Eigen::SparseMatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from 'class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >'
mincut.cpp:77:33:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
mincut.cpp:77:37:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
mincut.cpp:77:37:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
mincut.cpp:81:39:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >'
mincut.cpp:81:53:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:39:43:   required from 'struct Eigen::internal::traits<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
mincut.cpp:81:56:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
mincut.cpp:81:56:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> >'
mincut.cpp:83:56:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = int]'
mincut.cpp:29:51:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80:   required from 'struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8:   required from 'struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:495:54:   required from 'struct Eigen::internal::sparse_conjunction_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:345:8:   required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:103:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:131:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:465:11:   required from 'struct Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:535:54:   required from 'struct Eigen::internal::sparse_conjunction_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:345:8:   required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:103:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<double, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h:170:1:   required from 'const RCmpLTReturnType Eigen::ArrayBase<Derived>::operator>(const Scalar&) const [with Derived = Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >; Eigen::ArrayBase<Derived>::RCmpLTReturnType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Array<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double; Eigen::ArrayBase<Derived>::Scalar = double]'
mincut.cpp:81:39:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:12:   required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:685:15:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30:   required from 'Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::DenseBase<Derived>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10:   required from 'Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:5:   required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:685:15:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = int]':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from 'static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::internal::redux_evaluator<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = int]'
mincut.cpp:29:51:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include'   -I"c:/extsoft/include"  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c lib/maxflow/maxflow.cpp -o lib/maxflow/maxflow.o
"C:/rtools40/mingw32/bin/"ar crs libmaxflow.a lib/maxflow/maxflow.o
cp -r lib/maxflow "C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/00LOCK-martini/00new/martini/include"
mkdir -p "C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/00LOCK-martini/00new/martini/usrlib/i386"
cp libmaxflow.a "C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/00LOCK-martini/00new/martini/usrlib/i386"
C:\rtools40\mingw32\bin\nm.exe: 'libs': No such file
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o martini.dll tmp.def RcppExports.o mincut.o -pthread -fopenmp C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/00LOCK-martini/00new/martini/usrlib/i386/libmaxflow.a -lws2_32 -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/00LOCK-martini/00new/martini/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'martini'
    finding HTML links ... done
    arrange_covars                          html  
    calculateE                              html  
    calculateG                              html  
    check_installed                         html  
    connect_biomart                         html  
    get_GI_network                          html  
    get_GM_network                          html  
    get_GS_network                          html  
    get_adjacency                           html  
    get_grid                                html  
    get_gxg                                 html  
    get_gxg_biogrid                         html  
    get_gxg_string                          html  
    get_snp_modules                         html  
    group_snps                              html  
    gwas2bed                                html  
    is_coherent                             html  
    ldweight_edges                          html  
    maxflow                                 html  
    mget_gxg_biogrid                        html  
    mget_gxg_string                         html  
    mincut                                  html  
    mincut.cv                               html  
    mincut_c                                html  
    minigwas                                html  
    minippi                                 html  
    minisnpMapping                          html  
    organism_id2name                        html  
    permute_snpMatrix                       html  
    plot_ideogram                           html  
    sanitize_map                            html  
    sanitize_snpMapping                     html  
    scones                                  html  
    scones.cv                               html  
    scones.cv_                              html  
    scones_                                 html  
    score_fold                              html  
    search_cones                            html  
    sigmod                                  html  
    sigmod.cv                               html  
    sigmod.cv_                              html  
    sigmod_                                 html  
    simulate_causal_snps                    html  
    simulate_phenotype                      html  
    snp2ensembl                             html  
    snp_test                                html  
    subnet                                  html  
    subset_snpMatrix                        html  
    subvert                                 html  
    wrap_Xy                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'martini' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include'   -I"C:/extsoft/include"  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:377,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
../inst/include/martini_RcppExports.h:38:96:   recursively required by substitution of 'template<class T> SEXPREC* Rcpp::wrap(const Eigen::CholmodDecomposition<Eigen::SparseMatrix<Scalar> >&) [with T = <missing>]'
../inst/include/martini_RcppExports.h:38:96:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
../inst/include/martini_RcppExports.h:38:96:   recursively required by substitution of 'template<class T> SEXPREC* Rcpp::wrap(const Eigen::CholmodDecomposition<Eigen::SparseMatrix<Scalar> >&) [with T = <missing>]'
../inst/include/martini_RcppExports.h:38:96:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80:   required from 'struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8:   required from 'struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20:   required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28:   required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Sparse2Sparse>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<typename DstXprType::Scalar, typename SrcXprType::Scalar>&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>; Functor = Eigen::internal::assign_op<double, double>; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>; Func = Eigen::internal::assign_op<double, double>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27:   required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37:   required from 'Derived& Eigen::SparseMatrixBase<Derived>::operator=(const Derived&) [with Derived = Eigen::SparseMatrix<double, 0, int>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]'
RcppExports.cpp:57:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39:   required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38:   required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
../inst/include/martini_RcppExports.h:38:66:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = long long int]':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from 'static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::internal::redux_evaluator<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = long long int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:119:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39:   required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38:   required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
../inst/include/martini_RcppExports.h:38:66:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include'   -I"C:/extsoft/include"  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mincut.cpp -o mincut.o
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:377,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, -1, 1>'
mincut.cpp:41:12:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, -1, 1>'
mincut.cpp:41:12:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/EigenBase.h:41:59:   required from 'struct Eigen::EigenBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:26:34:   required from 'class Eigen::SparseMatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from mincut.cpp:7:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from 'class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >'
mincut.cpp:77:33:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
mincut.cpp:77:37:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
mincut.cpp:77:37:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
mincut.cpp:81:39:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >'
mincut.cpp:81:53:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:39:43:   required from 'struct Eigen::internal::traits<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
mincut.cpp:81:56:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
mincut.cpp:81:56:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)2>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> >'
mincut.cpp:83:56:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = long long int]'
mincut.cpp:29:51:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80:   required from 'struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8:   required from 'struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:495:54:   required from 'struct Eigen::internal::sparse_conjunction_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:345:8:   required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:103:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:131:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:465:11:   required from 'struct Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:535:54:   required from 'struct Eigen::internal::sparse_conjunction_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:345:8:   required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:103:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<double, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<double, -1, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h:170:1:   required from 'const RCmpLTReturnType Eigen::ArrayBase<Derived>::operator>(const Scalar&) const [with Derived = Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >; Eigen::ArrayBase<Derived>::RCmpLTReturnType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, (Eigen::internal::ComparisonName)1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Array<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double; Eigen::ArrayBase<Derived>::Scalar = double]'
mincut.cpp:81:39:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 3>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:12:   required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:685:15:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30:   required from 'Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::DenseBase<Derived>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10:   required from 'Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Map<Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:5:   required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:685:15:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]'
mincut.cpp:76:60:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = long long int]':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from 'static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::internal::redux_evaluator<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = long long int]'
mincut.cpp:29:51:   required from here
C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include'   -I"C:/extsoft/include"  -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c lib/maxflow/maxflow.cpp -o lib/maxflow/maxflow.o
"C:/rtools40/mingw64/bin/"ar crs libmaxflow.a lib/maxflow/maxflow.o
cp -r lib/maxflow "C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/martini/include"
mkdir -p "C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/martini/usrlib/x64"
cp libmaxflow.a "C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/martini/usrlib/x64"
C:\rtools40\mingw64\bin\nm.exe: 'libs': No such file
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o martini.dll tmp.def RcppExports.o mincut.o -pthread -fopenmp C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/martini/usrlib/x64/libmaxflow.a -lws2_32 -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/martini.buildbin-libdir/martini/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'martini' as martini_1.12.0.zip
* DONE (martini)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'martini' successfully unpacked and MD5 sums checked
INSTALL results for martini on tokay2

Summary

Command output
