Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:41 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the made4 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/made4.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1019/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
made4 1.66.0 (landing page) Aedin Culhane
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: made4 |
Version: 1.66.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:made4.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings made4_1.66.0.tar.gz |
StartedAt: 2021-10-14 20:36:22 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 20:39:23 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 181.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: made4.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:made4.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings made4_1.66.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/made4.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘made4/DESCRIPTION’ ... OK * this is package ‘made4’ version ‘1.66.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘made4’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: asDataFrame.Rd:30: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.13-bioc/meat/made4.Rcheck/00check.log’ for details.
made4.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL made4 ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘made4’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (made4)
made4.Rcheck/made4-Ex.timings
name | user | system | elapsed | |
NCI60 | 0.006 | 0.002 | 0.009 | |
bet.coinertia | 0.010 | 0.001 | 0.011 | |
between.graph | 0.372 | 0.038 | 0.410 | |
bga | 0.418 | 0.019 | 0.466 | |
bga.jackknife | 1.949 | 0.083 | 2.033 | |
bga.suppl | 0.577 | 0.011 | 0.589 | |
cia | 0.266 | 0.012 | 0.279 | |
commonMap | 0.037 | 0.001 | 0.038 | |
comparelists | 0.001 | 0.000 | 0.001 | |
do3d | 0.444 | 0.010 | 0.456 | |
genes1d | 0.148 | 0.012 | 0.160 | |
getcol | 0.034 | 0.003 | 0.039 | |
graph1D | 0.117 | 0.006 | 0.123 | |
heatplot | 2.208 | 0.113 | 2.371 | |
html3D | 0.317 | 0.010 | 0.328 | |
isDataFrame | 0.015 | 0.002 | 0.018 | |
khan | 0.006 | 0.002 | 0.009 | |
ord | 0.284 | 0.018 | 0.303 | |
overview | 0.152 | 0.007 | 0.161 | |
plotarrays | 0.316 | 0.007 | 0.323 | |
plotgenes | 0.190 | 0.007 | 0.196 | |
prettyDend | 0.122 | 0.006 | 0.128 | |
randomiser | 0.004 | 0.002 | 0.005 | |
s.var | 0.374 | 0.005 | 0.378 | |
sumstats | 0.344 | 0.007 | 0.352 | |
suppl | 0.561 | 0.010 | 0.573 | |
topgenes | 0.114 | 0.009 | 0.122 | |