Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:10 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the lumi package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/lumi.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1008/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
lumi 2.44.0 (landing page) Lei Huang
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: lumi |
Version: 2.44.0 |
Command: rm -rf lumi.buildbin-libdir && mkdir lumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=lumi.buildbin-libdir lumi_2.44.0.tar.gz |
StartedAt: 2021-10-15 10:07:46 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 10:09:16 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 90.0 seconds |
RetCode: 0 |
Status: OK |
PackageFile: lumi_2.44.0.zip |
PackageFileSize: 4.865 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf lumi.buildbin-libdir && mkdir lumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=lumi.buildbin-libdir lumi_2.44.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'lumi' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' ** help *** installing help indices converting help for package 'lumi' finding HTML links ... done IlluminaID2nuID html LumiBatch-class html MAplot-methods html addAnnotationInfo html addControlData2lumi html addControlData2methyLumiM html addNuID2lumi html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/lumi.buildbin-libdir/00LOCK-lumi/00new/lumi/help/addNuId2lumi.html adjColorBias.quantile html adjColorBias.ssn html asBigMatrix-methods html beta2m html bgAdjust html bgAdjustMethylation html boxplot-MethyLumiM-methods html finding level-2 HTML links ... done boxplot-methods html boxplotColorBias html colorBiasSummary html density-methods html detectOutlier html detectionCall html estimateBeta html estimateIntensity html estimateLumiCV html estimateM html estimateMethylationBG html example.lumi html example.lumiMethy html example.methyTitration html gammaFitEM html getChipInfo html getChrInfo html getControlData html getControlProbe html getControlType html getNuIDMappingInfo html hist-methods html id2seq html importMethyIDAT html inverseVST html is.nuID html lumi.package html lumiB html lumiExpresso html lumiMethyB html lumiMethyC html lumiMethyN html lumiMethyR html lumiMethyStatus html lumiN html lumiQ html lumiR html lumiR.batch html lumiT html m2beta html methylationCall html monoSmu html monoSpline html normalizeMethylation.quantile html normalizeMethylation.ssn html nuID2EntrezID html nuID2IlluminaID html nuID2RefSeqID html nuID2probeID html nuID2targetID html pairs-methods html plot-methods html plotCDF html plotColorBias1D html plotColorBias2D html plotControlData html plotDensity html plotGammaFit html plotHousekeepingGene html plotSampleRelation html plotStringencyGene html plotVST html probeID2nuID html produceGEOPlatformFile html produceGEOSampleInfoTemplate html produceGEOSubmissionFile html produceMethylationGEOSubmissionFile html rankinvariant html rsn html seq2id html smoothQuantileNormalization html ssn html targetID2nuID html vst html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' ** testing if installed package can be loaded from final location No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'lumi' ... ** testing if installed package can be loaded No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' * MD5 sums packaged installation of 'lumi' as lumi_2.44.0.zip * DONE (lumi)