Gordon Smyth
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/limma |
| git_branch: RELEASE_3_13 |
| git_last_commit: 80282e9 |
| git_last_commit_date: 2021-08-09 23:13:41 -0400 (Mon, 09 Aug 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:09 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the limma package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/limma.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 985/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| limma 3.48.3 (landing page) Gordon Smyth
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: limma |
| Version: 3.48.3 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/limma_3.48.3.tar.gz && rm -rf limma.buildbin-libdir && mkdir limma.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=limma.buildbin-libdir limma_3.48.3.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL limma_3.48.3.zip && rm limma_3.48.3.tar.gz limma_3.48.3.zip |
| StartedAt: 2021-10-14 06:52:40 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 06:56:09 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 209.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/limma_3.48.3.tar.gz && rm -rf limma.buildbin-libdir && mkdir limma.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=limma.buildbin-libdir limma_3.48.3.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL limma_3.48.3.zip && rm limma_3.48.3.tar.gz limma_3.48.3.zip
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install for i386
* installing *source* package 'limma' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c normexp.c -o normexp.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c weighted_lowess.c -o weighted_lowess.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o limma.dll tmp.def init.o normexp.o weighted_lowess.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/limma.buildbin-libdir/00LOCK-limma/00new/limma/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'limma'
finding HTML links ... done
01Introduction html
02classes html
03reading html
04Background html
05Normalization html
06linearmodels html
07SingleChannel html
08Tests html
09Diagnostics html
10GeneSetTests html
11RNAseq html
EList html
LargeDataObject html
PrintLayout html
TestResults html
alias2Symbol html
anova-method html
arrayWeights html
arrayWeightsQuick html
asMatrixWeights html
asdataframe html
asmalist html
asmatrix html
auROC html
avearrays html
avedups html
avereps html
backgroundcorrect html
barcodeplot html
beadCountWeights html
blockDiag html
bwss html
bwss.matrix html
camera html
cbind html
changelog html
channel2M html
chooseLowessSpan html
classifytestsF html
contrastAsCoef html
contrasts.fit html
controlStatus html
coolmap html
cumOverlap html
decideTests html
detectionPValue html
diffSplice html
dim html
dimnames html
dupcor html
ebayes html
exprsMA html
fitGammaIntercept html
fitfdist html
fitmixture html
fitted.MArrayLM html
genas html
geneSetTest html
getEAWP html
getSpacing html
getlayout html
gls.series html
goana html
gridspotrc html
head html
heatdiagram html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/limma.buildbin-libdir/00LOCK-limma/00new/limma/help/heatDiagram.html
helpMethods html
ids2indices html
imageplot html
imageplot3by2 html
intraspotCorrelation html
isfullrank html
isnumeric html
kooperberg html
limmaUsersGuide html
lm.series html
lmFit html
lmscFit html
loessfit html
logcosh html
logsumexp html
ma3x3 html
makeContrasts html
makeunique html
malist html
marraylm html
mdplot html
merge html
mergeScansRG html
modelMatrix html
modifyWeights html
mrlm html
nec html
normalizeCyclicLoess html
normalizeMedianAbsValues html
normalizeRobustSpline html
normalizeVSN html
normalizeWithinArrays html
normalizebetweenarrays html
normalizeprintorder html
normalizequantiles html
normexpfit html
normexpfitcontrol html
normexpfitdetectionp html
normexpsignal html
plotDensities html
plotExonJunc html
plotExons html
plotFB html
plotMD html
plotMDS html
plotRLDF html
plotSA html
plotSplice html
plotWithHighlights html
plotlines html
plotma html
plotma3by2 html
plotprinttiploess html
poolvar html
predFCm html
printHead html
printorder html
printtipWeights html
propTrueNull html
propexpr html
protectMetachar html
qqt html
qualwt html
rankSumTestwithCorrelation html
read.columns html
read.idat html
read.ilmn html
read.ilmn.targets html
read.maimages html
readGPRHeader html
readImaGeneHeader html
readSpotTypes html
readTargets html
readgal html
removeBatchEffect html
removeext html
residuals.MArrayLM html
rglist html
roast html
romer html
selectmodel html
squeezeVar html
strsplit2 html
subsetting html
summary html
targetsA2C html
tmixture html
topGO html
topRomer html
topSplice html
toptable html
tricubeMovingAverage html
trigammainverse html
trimWhiteSpace html
uniquegenelist html
unwrapdups html
venn html
volcanoplot html
voom html
voomWithQualityWeights html
vooma html
weightedLowess html
weightedmedian html
writefit html
wsva html
zscore html
zscoreT html
** building package indices
** installing vignettes
'intro.Rnw'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'limma' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c normexp.c -o normexp.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c weighted_lowess.c -o weighted_lowess.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o limma.dll tmp.def init.o normexp.o weighted_lowess.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/limma.buildbin-libdir/limma/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'limma' as limma_3.48.3.zip
* DONE (limma)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'limma' successfully unpacked and MD5 sums checked