Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:43 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the keggorthology package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/keggorthology.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 969/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
keggorthology 2.44.0 (landing page) VJ Carey
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: keggorthology |
Version: 2.44.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:keggorthology.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings keggorthology_2.44.0.tar.gz |
StartedAt: 2021-10-14 10:21:21 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 10:22:51 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 89.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: keggorthology.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:keggorthology.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings keggorthology_2.44.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/keggorthology.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘keggorthology/DESCRIPTION’ ... OK * this is package ‘keggorthology’ version ‘2.44.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘keggorthology’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘graph’ ‘stats’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘DBI’ All declared Imports should be used. Package in Depends field not imported from: ‘hgu95av2.db’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE getKOprobes: no visible binding for global variable ‘KOgraph’ getKOtags: no visible binding for global variable ‘KOgraph’ Undefined global functions or variables: KOgraph * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.13-bioc/meat/keggorthology.Rcheck/00check.log’ for details.
keggorthology.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL keggorthology ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘keggorthology’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (keggorthology)
keggorthology.Rcheck/keggorthology-Ex.timings
name | user | system | elapsed | |
getKOprobes | 0.196 | 0.032 | 0.228 | |
indRender | 0.053 | 0.004 | 0.057 | |
keggDF2graph | 0.009 | 0.000 | 0.009 | |