Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:43 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the iterativeBMAsurv package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iterativeBMAsurv.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 957/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
iterativeBMAsurv 1.50.0 (landing page) Ka Yee Yeung
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: iterativeBMAsurv |
Version: 1.50.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:iterativeBMAsurv.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings iterativeBMAsurv_1.50.0.tar.gz |
StartedAt: 2021-10-14 10:20:18 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 10:21:37 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 78.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: iterativeBMAsurv.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:iterativeBMAsurv.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings iterativeBMAsurv_1.50.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/iterativeBMAsurv.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘iterativeBMAsurv/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘iterativeBMAsurv’ version ‘1.50.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘iterativeBMAsurv’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘survival’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘BMA’ ‘leaps’ ‘splines’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE iterateBMAsurv.train: no visible global function definition for ‘bic.surv’ iterateBMAsurv.train.wrapper: no visible global function definition for ‘bic.surv’ Undefined global functions or variables: bic.surv * checking Rd files ... NOTE prepare_Rd: predictBicSurv.Rd:46: Dropping empty section \note prepare_Rd: predictiveAssessCategory.Rd:52: Dropping empty section \note prepare_Rd: printTopGenes.Rd:49: Dropping empty section \note prepare_Rd: singleGeneCoxph.Rd:54: Dropping empty section \note prepare_Rd: testCens.Rd:13-14: Dropping empty section \details prepare_Rd: testSurv.Rd:13-14: Dropping empty section \details prepare_Rd: trainCens.Rd:13-14: Dropping empty section \details prepare_Rd: trainSurv.Rd:13-14: Dropping empty section \details * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed imageplot.iterate.bma.surv 11.506 0.004 11.512 predictiveAssessCategory 5.632 0.076 5.709 iterateBMAsurv.train 5.484 0.063 5.549 predictBicSurv 5.191 0.024 5.215 iterateBMAsurv.train.wrapper 5.133 0.003 5.137 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See ‘/home/biocbuild/bbs-3.13-bioc/meat/iterativeBMAsurv.Rcheck/00check.log’ for details.
iterativeBMAsurv.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL iterativeBMAsurv ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘iterativeBMAsurv’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iterativeBMAsurv)
iterativeBMAsurv.Rcheck/iterativeBMAsurv-Ex.timings
name | user | system | elapsed | |
crossVal | 1.590 | 0.036 | 1.627 | |
imageplot.iterate.bma.surv | 11.506 | 0.004 | 11.512 | |
iterateBMAsurv.train | 5.484 | 0.063 | 5.549 | |
iterateBMAsurv.train.predict.assess | 0.622 | 0.032 | 0.654 | |
iterateBMAsurv.train.wrapper | 5.133 | 0.003 | 5.137 | |
iterativeBMAsurv-package | 2.066 | 0.036 | 2.102 | |
predictBicSurv | 5.191 | 0.024 | 5.215 | |
predictiveAssessCategory | 5.632 | 0.076 | 5.709 | |
printTopGenes | 0.316 | 0.000 | 0.316 | |
singleGeneCoxph | 0.345 | 0.000 | 0.345 | |