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This page was generated on 2021-10-15 15:06:08 -0400 (Fri, 15 Oct 2021).

CHECK results for interacCircos on tokay2

To the developers/maintainers of the interacCircos package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/interacCircos.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 928/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
interacCircos 1.2.0  (landing page)
Zhe Cui
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/interacCircos
git_branch: RELEASE_3_13
git_last_commit: a4bd6d5
git_last_commit_date: 2021-05-19 13:02:15 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: interacCircos
Version: 1.2.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:interacCircos.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings interacCircos_1.2.0.tar.gz
StartedAt: 2021-10-15 00:45:34 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 00:46:56 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 81.9 seconds
RetCode: 0
Status:   OK  
CheckDir: interacCircos.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:interacCircos.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings interacCircos_1.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/interacCircos.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'interacCircos/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'interacCircos' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'interacCircos' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

interacCircos.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/interacCircos_1.2.0.tar.gz && rm -rf interacCircos.buildbin-libdir && mkdir interacCircos.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=interacCircos.buildbin-libdir interacCircos_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL interacCircos_1.2.0.zip && rm interacCircos_1.2.0.tar.gz interacCircos_1.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 17  394k   17 68637    0     0   130k      0  0:00:03 --:--:--  0:00:03  130k
100  394k  100  394k    0     0   713k      0 --:--:-- --:--:-- --:--:--  714k

install for i386

* installing *source* package 'interacCircos' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'interacCircos'
    finding HTML links ... done
    Circos                                  html  
    CircosArc                               html  
    CircosAuxLine                           html  
    CircosBackground                        html  
    CircosBubble                            html  
    CircosChord                             html  
    CircosChord.p                           html  
    CircosCnv                               html  
    CircosGene                              html  
    CircosHeatmap                           html  
    CircosHistogram                         html  
    CircosLegend                            html  
    CircosLine                              html  
    CircosLink                              html  
    CircosLollipop                          html  
    CircosModuleList                        html  
    CircosScatter                           html  
    CircosSnp                               html  
    CircosText                              html  
    CircosWig                               html  
    arcExample                              html  
    bubbleExample                           html  
    chord.pExample                          html  
    chordExample                            html  
    cnvExample                              html  
    geneExample                             html  
    heatmapExample                          html  
    hg19_ideogram                           html  
    histogramExample                        html  
    lineExample                             html  
    linkExample                             html  
    lollipopExample                         html  
    scatterExample                          html  
    snpExample                              html  
    wigExample                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'interacCircos' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'interacCircos' as interacCircos_1.2.0.zip
* DONE (interacCircos)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'interacCircos' successfully unpacked and MD5 sums checked

Tests output


Example timings

interacCircos.Rcheck/examples_i386/interacCircos-Ex.timings

nameusersystemelapsed
Circos0.160.051.44
CircosArc0.190.050.30
CircosAuxLine0.140.060.36
CircosBackground0.110.060.29
CircosBubble0.490.060.57
CircosChord0.170.020.22
CircosChord.p0.140.020.17
CircosCnv0.330.030.50
CircosGene0.150.040.29
CircosHeatmap0.470.050.51
CircosHistogram0.190.050.25
CircosLegend0.120.060.38
CircosLine0.490.030.59
CircosLink0.150.020.19
CircosLollipop0.350.000.45
CircosScatter1.200.031.27
CircosSnp0.740.010.89
CircosText0.120.050.34
CircosWig1.250.031.50

interacCircos.Rcheck/examples_x64/interacCircos-Ex.timings

nameusersystemelapsed
Circos0.200.030.28
CircosArc0.220.050.35
CircosAuxLine0.130.060.28
CircosBackground0.100.080.24
CircosBubble0.540.010.65
CircosChord0.110.070.22
CircosChord.p0.130.060.29
CircosCnv0.320.050.41
CircosGene0.180.010.27
CircosHeatmap0.500.030.59
CircosHistogram0.280.030.36
CircosLegend0.130.030.17
CircosLine0.500.040.56
CircosLink0.150.040.20
CircosLollipop0.290.031.35
CircosScatter1.290.001.31
CircosSnp0.610.040.69
CircosText0.110.010.14
CircosWig1.030.051.11